Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_179950.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_179950.1 0 3.74 4.21 7.37 8.78

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_179950.1 SmLINC00001-IBu 0.91 1.61e-06 7.21e-05
Smp_179950.1 SmLINC00004-IBu 0.90 4.51e-06 1.00e-04
Smp_179950.1 SmLINC00525-IBu 0.80 3.00e-04 3.30e-03
Smp_179950.1 SmLINC01084-IBu 0.80 2.00e-04 2.80e-03
Smp_179950.1 SmLINC01432-IBu 0.84 8.82e-05 1.20e-03
Smp_179950.1 SmLINC02029-IBu 0.81 2.00e-04 2.60e-03
Smp_179950.1 SmLINC02376-IBu 0.90 3.44e-06 1.00e-04
Smp_179950.1 SmLINC02394-IBu 0.84 8.26e-05 1.20e-03
Smp_179950.1 SmLINC02539-IBu 0.82 1.00e-04 2.10e-03
Smp_179950.1 SmLINC02577-IBu 0.81 2.00e-04 2.70e-03
Smp_179950.1 SmLINC03326-IBu 0.81 2.00e-04 2.50e-03
Smp_179950.1 SmLINC03658-IBu 0.83 1.00e-04 1.50e-03
Smp_179950.1 SmLINC04235-IBu 0.91 2.32e-06 9.33e-05
Smp_179950.1 SmLINC04421-IBu 0.88 1.29e-05 3.00e-04
Smp_179950.1 SmLINC04423-IBu 0.90 4.83e-06 1.00e-04
Smp_179950.1 SmLINC04627-IBu 0.82 1.00e-04 2.10e-03
Smp_179950.1 SmLINC05289-IBu 0.87 1.68e-05 3.00e-04
Smp_179950.1 SmLINC05604-IBu 0.89 7.30e-06 2.00e-04
Smp_179950.1 SmLINC05684-IBu 0.80 3.00e-04 3.20e-03
Smp_179950.1 SmLINC06024-IBu 0.85 5.07e-05 8.00e-04
Smp_179950.1 SmLINC06145-IBu 0.85 4.51e-05 7.00e-04
Smp_179950.1 SmLINC06239-IBu 0.90 3.93e-06 1.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_024180.1 0 3.08 4.23 10.66 11.72
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_131490.1 0 4.93 6.36 11.30 13.29
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_179950.1 0 3.74 4.21 7.37 8.78
Smp_201910.1 0 3.92 4.88 11.60 12.63
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_203030.1 0 2.55 0.41 8.36 10.39

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_016490.2 Smp_179950.1 0.90 3.12e-06 1.00e-04
Smp_179950.1 Smp_024180.1 0.95 1.64e-08 3.18e-06
Smp_024180.2 Smp_179950.1 0.95 3.93e-08 5.74e-06
Smp_179950.1 Smp_028870.1 0.90 2.82e-06 1.00e-04
Smp_050350.3 Smp_179950.1 0.91 2.02e-06 8.77e-05
Smp_179950.1 Smp_094050.1 0.90 3.98e-06 1.00e-04
Smp_179950.1 Smp_130100.1 0.90 3.69e-06 1.00e-04
Smp_179950.1 Smp_131490.1 0.90 3.34e-06 1.00e-04
Smp_179950.1 Smp_155570.1 0.90 2.99e-06 1.00e-04
Smp_179950.1 Smp_156930.1 0.90 4.71e-06 1.00e-04
Smp_159650.1 Smp_179950.1 0.92 6.39e-07 3.89e-05
Smp_179950.1 Smp_201910.1 0.96 3.45e-09 1.13e-06
Smp_179950.1 Smp_202610.1 0.90 4.74e-06 1.00e-04
Smp_203030.1 Smp_179950.1 0.91 1.55e-06 7.29e-05