Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_179740.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC04947-IBu 0 -5.01 1.51 -1.96 -5.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_179740.1 0 1.00 3.85 0.39 0.86

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_179740.1 SmLINC00372-IBu 0.96 1.37e-08 2.64e-06
Smp_179740.1 SmLINC01316-IBu 0.80 3.00e-04 3.20e-03
Smp_179740.1 SmLINC04430-IBu 0.92 8.65e-07 4.63e-05
Smp_179740.1 SmLINC04947-IBu 0.95 3.15e-08 4.65e-06
Smp_179740.1 SmLINC05559-IBu 0.97 5.61e-10 3.24e-07
Smp_179740.1 SmLINC06700-IBu 0.82 1.00e-04 1.70e-03
Smp_179740.1 SmLINC06836-IBu 0.96 1.06e-08 2.22e-06
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_010140.2 0 7.72 10.83 -3.68 -3.68
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_062070.1 0 9.47 10.97 6.18 8.79
Smp_084940.2 0 10.34 11.98 9.66 9.92
Smp_138080.1 0 4.97 10.75 -3.79 3.75
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
Smp_159150.1 0 12.28 13.98 12.38 11.81
Smp_179740.1 0 1.00 3.85 0.39 0.86

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_010140.2 Smp_179740.1 0.93 2.75e-07 2.17e-05
Smp_179740.1 Smp_032120.1 0.92 9.91e-07 5.30e-05
Smp_062070.1 Smp_179740.1 0.92 9.39e-07 5.10e-05
Smp_084940.2 Smp_179740.1 0.90 3.42e-06 1.00e-04
Smp_138080.1 Smp_179740.1 0.95 1.78e-08 3.36e-06
Smp_159070.3 Smp_179740.1 0.96 9.63e-09 2.22e-06
Smp_159150.1 Smp_179740.1 0.92 1.17e-06 5.99e-05