Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_179710.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC04896-IBu 0 -1.86 -3.75 1.58 4.07
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_179710.1 0 0.24 -0.01 -0.87 4.04

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_179710.1 SmLINC01520-IBu 0.85 5.91e-05 9.00e-04
Smp_179710.1 SmLINC02029-IBu 0.90 4.69e-06 1.00e-04
Smp_179710.1 SmLINC02577-IBu 0.82 1.00e-04 1.80e-03
Smp_179710.1 SmLINC02783-IBu 0.85 5.73e-05 9.00e-04
Smp_179710.1 SmLINC02786-IBu 0.94 9.88e-08 1.01e-05
Smp_179710.1 SmLINC03658-IBu 0.89 8.26e-06 2.00e-04
Smp_179710.1 SmLINC04235-IBu 0.88 9.18e-06 2.00e-04
Smp_179710.1 SmLINC04627-IBu 0.82 1.00e-04 2.10e-03
Smp_179710.1 SmLINC04896-IBu 0.92 7.39e-07 4.14e-05
Smp_179710.1 SmLINC05404-IBu 0.92 6.09e-07 3.61e-05
Smp_179710.1 SmLINC05684-IBu 0.89 5.59e-06 1.00e-04
Smp_179710.1 SmLINC06239-IBu 0.90 3.91e-06 1.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_089270.1 0 3.49 0.00 4.50 10.21
Smp_105450.1 0 4.55 9.19 10.26 14.94
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_126340.1 0 0.00 2.97 7.05 12.21
Smp_130970.1 0 4.67 2.67 4.97 10.18
Smp_137460.1 0 4.80 0.00 4.12 10.48
Smp_138360.1 0 -0.10 -4.27 4.84 10.60
Smp_152150.1 0 0.00 0.00 8.69 15.96
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_167830.1 0 0.00 0.00 6.17 12.87
Smp_170840.1 0 3.57 0.00 5.93 11.86
Smp_179710.1 0 0.24 -0.01 -0.87 4.04
Smp_181070.1 0 0.13 0.63 8.07 11.05

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_041540.1 Smp_179710.1 0.96 6.29e-09 1.68e-06
Smp_179710.1 Smp_070540.1 0.92 5.55e-07 3.53e-05
Smp_089270.1 Smp_179710.1 0.96 7.59e-09 1.90e-06
Smp_105450.1 Smp_179710.1 0.92 5.32e-07 3.43e-05
Smp_179710.1 Smp_105450.2 0.92 6.56e-07 3.97e-05
Smp_126340.1 Smp_179710.1 0.92 1.10e-06 5.73e-05
Smp_130970.1 Smp_179710.1 0.90 2.98e-06 1.00e-04
Smp_137460.1 Smp_179710.1 0.97 7.21e-10 4.13e-07
Smp_138360.1 Smp_179710.1 0.93 3.98e-07 2.80e-05
Smp_152150.1 Smp_179710.1 0.99 3.34e-13 3.35e-09
Smp_164400.1 Smp_179710.1 0.98 2.35e-11 4.70e-08
Smp_167830.1 Smp_179710.1 0.96 1.37e-08 2.81e-06
Smp_170840.1 Smp_179710.1 0.97 7.63e-10 4.28e-07
Smp_181070.1 Smp_179710.1 0.90 2.88e-06 1.00e-04