Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_179460.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_179460.1 0 -2.52 -7.07 -4.09 -3.97

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_179460.1 SmLINC02678-IBu 0.80 2.00e-04 3.10e-03
Smp_179460.1 SmLINC06128-IBu 0.85 4.10e-05 7.00e-04
Smp_179460.1 SmLINC06892-IBu 0.81 2.00e-04 2.40e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_032990.1 0 -1.53 -9.49 -13.75 -8.21
Smp_085290.3 0 -2.11 -9.33 -13.07 -9.78
Smp_102670.1 0 -2.95 -8.79 -12.62 -12.62
Smp_116760.1 0 -1.93 -4.95 -12.63 -10.20
Smp_133770.1 0 -4.18 -7.68 -11.38 -11.45
Smp_153240.1 0 -4.59 -8.67 -11.23 -11.04
Smp_169190.1 0 -3.08 -5.99 -19.20 -16.89
Smp_179460.1 0 -2.52 -7.07 -4.09 -3.97
Smp_183020.1 0 -2.31 -1.58 -15.79 -15.79
Smp_183020.6 0 -2.31 -1.58 -15.79 -15.79
Smp_184460.1 0 -2.24 -5.26 -13.63 -13.63
Smp_185350.1 0 -1.75 -2.87 -10.48 -10.48
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83
Smp_206150.1 0 -1.95 -4.12 -11.47 -11.47

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032990.1 Smp_179460.1 0.94 1.78e-07 1.60e-05
Smp_179460.1 Smp_085290.3 0.91 2.16e-06 9.20e-05
Smp_102670.1 Smp_179460.1 0.93 3.83e-07 2.73e-05
Smp_116760.1 Smp_179460.1 0.94 1.62e-07 1.50e-05
Smp_179460.1 Smp_133770.1 0.92 5.98e-07 3.72e-05
Smp_179460.1 Smp_153240.1 0.90 3.30e-06 1.00e-04
Smp_169190.1 Smp_179460.1 0.94 1.73e-07 1.58e-05
Smp_183020.1 Smp_179460.1 0.92 8.78e-07 4.87e-05
Smp_183020.6 Smp_179460.1 0.92 8.78e-07 4.87e-05
Smp_184460.1 Smp_179460.1 0.90 3.21e-06 1.00e-04
Smp_185350.1 Smp_179460.1 0.92 8.66e-07 4.82e-05
Smp_185360.1 Smp_179460.1 0.92 1.14e-06 5.87e-05
Smp_206150.1 Smp_179460.1 0.95 1.81e-08 3.40e-06