Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_179410.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00007-IBu 0 2.71 2.19 5.12 7.33
SmLINC00266-IBu 0 2.25 3.99 6.14 6.95
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02776-IBu 0 4.33 2.79 6.19 9.25
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04237-IBu 0 0.00 0.00 3.71 7.42
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
Smp_179410.1 0 -0.77 -1.87 2.47 5.15

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_179410.1 SmLINC00001-IBu 0.87 1.66e-05 3.00e-04
Smp_179410.1 SmLINC00004-IBu 0.83 1.00e-04 1.40e-03
Smp_179410.1 SmLINC00007-IBu 0.97 2.74e-10 2.04e-07
Smp_179410.1 SmLINC00266-IBu 0.82 1.00e-04 1.90e-03
Smp_179410.1 SmLINC01520-IBu 0.96 6.12e-09 1.54e-06
Smp_179410.1 SmLINC02029-IBu 0.91 2.12e-06 8.77e-05
Smp_179410.1 SmLINC02394-IBu 0.86 3.79e-05 6.00e-04
Smp_179410.1 SmLINC02539-IBu 0.95 2.49e-08 3.95e-06
Smp_179410.1 SmLINC02540-IBu 0.97 1.00e-09 4.72e-07
Smp_179410.1 SmLINC02577-IBu 0.96 3.71e-09 1.10e-06
Smp_179410.1 SmLINC02776-IBu 0.98 2.51e-12 1.05e-08
Smp_179410.1 SmLINC02783-IBu 0.96 9.06e-09 2.00e-06
Smp_179410.1 SmLINC02786-IBu 0.93 3.74e-07 2.57e-05
Smp_179410.1 SmLINC03326-IBu 0.92 1.09e-06 5.45e-05
Smp_179410.1 SmLINC03658-IBu 0.83 9.62e-05 1.30e-03
Smp_179410.1 SmLINC04235-IBu 0.84 8.52e-05 1.20e-03
Smp_179410.1 SmLINC04237-IBu 0.97 1.37e-09 5.79e-07
Smp_179410.1 SmLINC04627-IBu 0.90 2.92e-06 1.00e-04
Smp_179410.1 SmLINC05289-IBu 0.86 3.73e-05 6.00e-04
Smp_179410.1 SmLINC05404-IBu 0.84 6.14e-05 9.00e-04
Smp_179410.1 SmLINC05604-IBu 0.82 1.00e-04 1.90e-03
Smp_179410.1 SmLINC05684-IBu 0.95 3.13e-08 4.64e-06
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_007950.1 0 5.54 7.26 12.66 14.89
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_083430.1 0 4.18 6.49 11.73 13.40
Smp_085180.1 0 1.48 5.09 10.70 12.92
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_105450.1 0 4.55 9.19 10.26 14.94
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_123880.1 0 1.71 4.05 9.88 12.08
Smp_126340.1 0 0.00 2.97 7.05 12.21
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_137720.1 0 0.96 3.51 9.34 11.95
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_162320.1 0 0.58 2.27 8.70 11.23
Smp_163700.1 0 -1.15 0.72 8.02 10.29
Smp_164320.1 0 0.97 4.76 9.93 12.08
Smp_179410.1 0 -0.77 -1.87 2.47 5.15
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_194380.1 0 2.98 2.11 7.89 10.14
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_196830.1 0 -0.76 0.59 8.97 10.89
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_205580.1 0 2.85 4.80 9.78 12.43

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_007950.1 Smp_179410.1 0.97 3.77e-10 2.73e-07
Smp_016490.2 Smp_179410.1 0.90 3.21e-06 1.00e-04
Smp_179410.1 Smp_028870.1 0.90 3.52e-06 1.00e-04
Smp_179410.1 Smp_037720.1 0.94 1.10e-07 1.15e-05
Smp_041540.1 Smp_179410.1 0.91 2.40e-06 9.91e-05
Smp_179410.1 Smp_070540.1 0.95 4.12e-08 5.93e-06
Smp_083430.1 Smp_179410.1 0.94 6.54e-08 8.10e-06
Smp_085180.1 Smp_179410.1 0.92 7.80e-07 4.48e-05
Smp_179410.1 Smp_102780.1 0.91 1.40e-06 6.77e-05
Smp_179410.1 Smp_105450.1 0.94 1.16e-07 1.20e-05
Smp_179410.1 Smp_105450.2 0.93 3.09e-07 2.35e-05
Smp_179410.1 Smp_123880.1 0.95 1.61e-08 3.14e-06
Smp_126340.1 Smp_179410.1 0.95 2.59e-08 4.33e-06
Smp_179410.1 Smp_131410.1 0.95 2.46e-08 4.18e-06
Smp_179410.1 Smp_136730.1 0.96 3.87e-09 1.22e-06
Smp_137720.1 Smp_179410.1 0.93 3.71e-07 2.67e-05
Smp_179410.1 Smp_137810.1 0.91 2.45e-06 1.00e-04
Smp_139160.1 Smp_179410.1 0.92 6.25e-07 3.84e-05
Smp_179410.1 Smp_139240.1 0.96 5.37e-09 1.51e-06
Smp_162320.1 Smp_179410.1 0.92 5.36e-07 3.45e-05
Smp_179410.1 Smp_163700.1 0.97 1.65e-09 7.04e-07
Smp_179410.1 Smp_164320.1 0.93 3.17e-07 2.40e-05
Smp_181070.1 Smp_179410.1 0.92 7.82e-07 4.49e-05
Smp_179410.1 Smp_187140.1 0.95 2.34e-08 4.04e-06
Smp_194380.1 Smp_179410.1 0.97 1.06e-09 5.30e-07
Smp_179410.1 Smp_194910.1 0.94 9.64e-08 1.05e-05
Smp_196830.1 Smp_179410.1 0.96 1.04e-08 2.35e-06
Smp_179410.1 Smp_202610.1 0.90 3.38e-06 1.00e-04
Smp_179410.1 Smp_205580.1 0.95 3.62e-08 5.43e-06