Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_179300.3 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00784-IBu 0 0.40 -3.11 -2.84 -3.25
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04366-IBu 0 0.53 -1.17 -2.70 -4.36
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_179300.3 0 -0.68 -3.23 -9.39 -8.12

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_179300.3 SmLINC00282-IBu 0.80 2.00e-04 2.80e-03
Smp_179300.3 SmLINC00784-IBu 0.83 9.81e-05 1.30e-03
Smp_179300.3 SmLINC01637-IBu 0.81 2.00e-04 2.70e-03
Smp_179300.3 SmLINC02255-IBu 0.84 6.97e-05 1.00e-03
Smp_179300.3 SmLINC02630-IBu 0.89 7.40e-06 2.00e-04
Smp_179300.3 SmLINC03848-IBu 0.83 1.00e-04 1.40e-03
Smp_179300.3 SmLINC03930-IBu 0.82 1.00e-04 2.10e-03
Smp_179300.3 SmLINC04366-IBu 0.80 3.00e-04 3.10e-03
Smp_179300.3 SmLINC05284-IBu 0.86 3.73e-05 6.00e-04
Smp_179300.3 SmLINC05716-IBu 0.80 2.00e-04 2.80e-03
Smp_179300.3 SmLINC05720-IBu 0.91 1.36e-06 6.40e-05
Smp_179300.3 SmLINC06535-IBu 0.85 3.92e-05 7.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_077690.1 0 -0.88 -2.98 -12.11 -12.11
Smp_083340.4 0 -0.76 -5.02 -9.88 -12.95
Smp_097800.1 0 -1.17 -2.80 -12.04 -16.29
Smp_179300.3 0 -0.68 -3.23 -9.39 -8.12
Smp_184760.1 0 -0.25 -4.83 -11.75 -14.03

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_077690.1 Smp_179300.3 0.90 3.58e-06 1.00e-04
Smp_083340.4 Smp_179300.3 0.92 1.05e-06 5.52e-05
Smp_097800.1 Smp_179300.3 0.96 8.39e-09 2.03e-06
Smp_184760.1 Smp_179300.3 0.94 6.61e-08 8.16e-06