Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_179300.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00784-IBu 0 0.40 -3.11 -2.84 -3.25
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01462-IBu 0 0.69 -0.90 -3.10 -4.62
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03056-IBu 0 1.41 -1.34 -4.42 -9.40
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
SmLINC04366-IBu 0 0.53 -1.17 -2.70 -4.36
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_179300.1 0 -0.63 -3.33 -6.15 -5.23

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_179300.1 SmLINC00037-IBu 0.89 5.49e-06 1.00e-04
Smp_179300.1 SmLINC00133-IBu 0.87 1.67e-05 3.00e-04
Smp_179300.1 SmLINC00282-IBu 0.92 8.31e-07 4.50e-05
Smp_179300.1 SmLINC00294-IBu 0.83 1.00e-04 1.50e-03
Smp_179300.1 SmLINC00784-IBu 0.80 2.00e-04 2.80e-03
Smp_179300.1 SmLINC01084-IBu -0.82 1.00e-04 2.00e-03
Smp_179300.1 SmLINC01431-IBu -0.81 2.00e-04 2.50e-03
Smp_179300.1 SmLINC01462-IBu 0.83 1.00e-04 1.50e-03
Smp_179300.1 SmLINC01486-IBu 0.87 2.25e-05 4.00e-04
Smp_179300.1 SmLINC01637-IBu 0.93 4.19e-07 2.78e-05
Smp_179300.1 SmLINC02084-IBu -0.80 3.00e-04 3.10e-03
Smp_179300.1 SmLINC02255-IBu 0.93 2.34e-07 1.85e-05
Smp_179300.1 SmLINC02630-IBu 0.94 1.56e-07 1.39e-05
Smp_179300.1 SmLINC02657-IBu 0.89 5.98e-06 1.00e-04
Smp_179300.1 SmLINC03056-IBu 0.80 2.00e-04 2.80e-03
Smp_179300.1 SmLINC03848-IBu 0.88 1.06e-05 2.00e-04
Smp_179300.1 SmLINC03849-IBu 0.81 2.00e-04 2.60e-03
Smp_179300.1 SmLINC03930-IBu 0.89 5.63e-06 1.00e-04
Smp_179300.1 SmLINC04271-IBu 0.80 2.00e-04 2.90e-03
Smp_179300.1 SmLINC04366-IBu 0.85 5.01e-05 8.00e-04
Smp_179300.1 SmLINC04421-IBu -0.81 1.00e-04 2.20e-03
Smp_179300.1 SmLINC05284-IBu 0.96 1.09e-08 2.27e-06
Smp_179300.1 SmLINC05716-IBu 0.89 5.57e-06 1.00e-04
Smp_179300.1 SmLINC05720-IBu 0.94 9.42e-08 9.85e-06
Smp_179300.1 SmLINC06535-IBu 0.95 1.51e-08 2.82e-06
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_160230.1 0 -0.76 -3.24 -8.69 -10.72
Smp_179300.1 0 -0.63 -3.33 -6.15 -5.23

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_179300.1 Smp_036270.4 0.95 2.45e-08 4.16e-06
Smp_179300.1 Smp_055340.2 -0.90 4.29e-06 1.00e-04
Smp_179300.1 Smp_111640.1 0.90 4.83e-06 1.00e-04
Smp_179300.1 Smp_160230.1 0.92 8.53e-07 4.77e-05