Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_179270.1 Data

Correlation between Smp_179270.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_179270.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00554-IBu 0 -0.37 -11.45 -11.45 -2.78
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_179270.1 0 -1.07 -3.21 -9.00 -8.54

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_179270.1 SmLINC00282-IBu 0.81 2.00e-04 2.60e-03
Smp_179270.1 SmLINC00554-IBu 0.81 2.00e-04 2.60e-03
Smp_179270.1 SmLINC00556-IBu 0.83 1.00e-04 1.50e-03
Smp_179270.1 SmLINC02255-IBu 0.90 2.93e-06 1.00e-04
Smp_179270.1 SmLINC02630-IBu 0.92 6.21e-07 3.66e-05
Smp_179270.1 SmLINC02657-IBu 0.85 5.01e-05 8.00e-04
Smp_179270.1 SmLINC02888-IBu 0.84 6.71e-05 1.00e-03
Smp_179270.1 SmLINC03769-IBu 0.80 3.00e-04 3.20e-03
Smp_179270.1 SmLINC03930-IBu 0.81 2.00e-04 2.60e-03
Smp_179270.1 SmLINC05284-IBu 0.86 2.70e-05 5.00e-04
Smp_179270.1 SmLINC05989-IBu 0.84 7.50e-05 1.10e-03
Smp_179270.1 SmLINC06128-IBu 0.92 6.77e-07 3.89e-05
Smp_179270.1 SmLINC06535-IBu 0.87 1.57e-05 3.00e-04
Smp_179270.1 SmLINC06903-IBu 0.83 1.00e-04 1.40e-03

Correlation between Smp_179270.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_035090.2 0 -1.41 -2.69 -14.78 -14.86
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_109240.1 0 -1.29 -3.52 -6.30 -10.11
Smp_149670.1 0 -1.98 -3.69 -10.45 -9.35
Smp_179270.1 0 -1.07 -3.21 -9.00 -8.54
Smp_195070.1 0 -1.13 -9.73 -18.26 -16.31

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_179270.1 Smp_035090.2 0.92 7.90e-07 4.52e-05
Smp_179270.1 Smp_055340.2 -0.91 1.94e-06 8.53e-05
Smp_179270.1 Smp_109240.1 0.94 8.32e-08 9.54e-06
Smp_179270.1 Smp_149670.1 0.91 2.35e-06 9.75e-05
Smp_179270.1 Smp_195070.1 0.91 1.46e-06 6.98e-05