Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_179110.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00554-IBu 0 -0.37 -11.45 -11.45 -2.78
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC03485-IBu 0 -0.93 -1.24 -9.54 -9.54
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
Smp_179110.1 0 -1.09 -2.38 -5.56 -6.62

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_179110.1 SmLINC00554-IBu 0.80 2.00e-04 3.00e-03
Smp_179110.1 SmLINC00556-IBu 0.93 3.57e-07 2.48e-05
Smp_179110.1 SmLINC01084-IBu -0.80 2.00e-04 2.90e-03
Smp_179110.1 SmLINC01431-IBu -0.80 2.00e-04 2.90e-03
Smp_179110.1 SmLINC02888-IBu 0.87 1.82e-05 4.00e-04
Smp_179110.1 SmLINC03485-IBu 0.87 2.45e-05 5.00e-04
Smp_179110.1 SmLINC05274-IBu 0.84 7.11e-05 1.10e-03