Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_178400.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC02038-IBu 0 -0.52 -1.85 -8.62 -8.62
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC05990-IBu 0 9.67 10.42 11.79 11.49
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_178400.1 0 -0.69 -3.92 -8.55 -3.91

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_178400.1 SmLINC00037-IBu 0.84 8.52e-05 1.20e-03
Smp_178400.1 SmLINC00133-IBu 0.85 4.44e-05 7.00e-04
Smp_178400.1 SmLINC00282-IBu 0.88 1.24e-05 3.00e-04
Smp_178400.1 SmLINC01486-IBu 0.80 2.00e-04 2.90e-03
Smp_178400.1 SmLINC01637-IBu 0.80 2.00e-04 2.90e-03
Smp_178400.1 SmLINC02038-IBu 0.86 2.68e-05 5.00e-04
Smp_178400.1 SmLINC02255-IBu 0.83 1.00e-04 1.60e-03
Smp_178400.1 SmLINC02657-IBu 0.83 1.00e-04 1.40e-03
Smp_178400.1 SmLINC03769-IBu 0.94 6.97e-08 8.00e-06
Smp_178400.1 SmLINC03848-IBu 0.90 3.40e-06 1.00e-04
Smp_178400.1 SmLINC03930-IBu 0.89 6.84e-06 2.00e-04
Smp_178400.1 SmLINC05284-IBu 0.83 1.00e-04 1.50e-03
Smp_178400.1 SmLINC05989-IBu 0.82 1.00e-04 2.00e-03
Smp_178400.1 SmLINC05990-IBu -0.80 3.00e-04 3.30e-03
Smp_178400.1 SmLINC06535-IBu 0.86 3.08e-05 6.00e-04
Smp_178400.1 SmLINC06903-IBu 0.84 7.96e-05 1.10e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_009320.1 0 -0.45 -10.12 -7.98 -10.12
Smp_034940.3 0 -1.53 -6.25 -9.66 -13.38
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_051230.4 0 -1.10 -5.26 -12.47 -12.47
Smp_112090.1 0 0.15 -7.44 -10.10 -10.10
Smp_168080.2 0 -1.01 -12.06 -12.06 -12.06
Smp_178400.1 0 -0.69 -3.92 -8.55 -3.91
Smp_195070.1 0 -1.13 -9.73 -18.26 -16.31

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_009320.1 Smp_178400.1 0.90 3.24e-06 1.00e-04
Smp_034940.3 Smp_178400.1 0.91 1.92e-06 8.47e-05
Smp_036270.4 Smp_178400.1 0.93 3.19e-07 2.40e-05
Smp_051230.4 Smp_178400.1 0.93 2.36e-07 1.95e-05
Smp_112090.1 Smp_178400.1 0.90 3.41e-06 1.00e-04
Smp_168080.2 Smp_178400.1 0.92 5.40e-07 3.47e-05
Smp_195070.1 Smp_178400.1 0.91 1.97e-06 8.61e-05