Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_178240.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02039-IBu 0 -3.01 -8.41 -3.05 -3.36
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_178240.1 0 -3.79 -9.33 -8.87 -11.00

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_178240.1 SmLINC02039-IBu 0.90 2.55e-06 1.00e-04
Smp_178240.1 SmLINC02678-IBu 0.88 8.86e-06 2.00e-04
Smp_178240.1 SmLINC02888-IBu 0.86 2.88e-05 5.00e-04
Smp_178240.1 SmLINC06128-IBu 0.85 4.58e-05 8.00e-04
Smp_178240.1 SmLINC06892-IBu 0.88 9.07e-06 2.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02039-IBu 0 -3.01 -8.41 -3.05 -3.36
SmLINC05670-IBu 0 -3.35 -5.02 -2.57 -4.14
Smp_002640.1 0 -3.78 -3.97 -2.17 -4.00
Smp_003770.1 0 -2.73 -3.76 -4.30 -3.65
Smp_005860.1 0 -1.88 -5.14 -8.12 -7.71
Smp_005860.3 0 -2.06 -4.24 -7.23 -8.92
Smp_006560.1 0 -3.55 -6.46 -6.31 -5.44
Smp_009390.1 0 -2.49 -4.72 -3.30 -3.76
Smp_009650.2 0 -7.49 -7.79 -8.95 -11.71
Smp_018880.1 0 -2.71 -8.49 -10.03 -6.16
Smp_019750.2 0 -2.70 -5.17 -4.10 -4.19
Smp_021730.1 0 -2.52 -3.78 -4.00 -3.90
Smp_022430.1 0 -3.19 -4.81 -4.61 -4.50
Smp_028990.2 0 -2.03 -4.85 -4.73 -6.76
Smp_033610.1 0 -2.04 -4.32 -5.07 -4.63
Smp_036400.2 0 -2.63 -11.95 -8.03 -7.25
Smp_038560.6 0 -3.08 -4.79 -5.99 -7.18
Smp_042160.1 0 -2.29 -5.11 -4.28 -4.75
Smp_042270.1 0 -6.69 -4.66 -8.17 -6.53
Smp_046090.1 0 -4.19 -6.28 -7.15 -8.65
Smp_052060.1 0 -2.31 -3.14 -4.09 -3.50
Smp_053700.1 0 -3.20 -7.73 -2.51 -1.90
Smp_057060.1 0 -3.71 -5.93 -6.06 -6.08
Smp_057790.1 0 -3.82 -7.29 -4.86 -7.43
Smp_059930.1 0 -3.75 -7.72 -3.31 -3.23
Smp_061870.1 0 -2.53 -4.47 -5.29 -5.38
Smp_061940.1 0 -2.48 -6.54 -5.15 -5.02
Smp_065580.1 0 -2.41 -12.61 -6.08 -5.45
Smp_074560.1 0 -3.36 -3.15 -2.58 -5.11
Smp_074570.1 0 -1.85 -4.23 -8.15 -8.27
Smp_085290.3 0 -2.11 -9.33 -13.07 -9.78
Smp_097490.1 0 -3.10 -5.15 -2.72 -1.99
Smp_099420.1 0 -2.79 -4.14 -4.04 -2.98
Smp_102670.1 0 -2.95 -8.79 -12.62 -12.62
Smp_105610.1 0 -3.66 -7.36 -5.82 -7.17
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
Smp_108050.1 0 -2.06 -3.07 -8.81 -9.10
Smp_113710.1 0 -3.35 -5.78 -3.90 -2.82
Smp_113760.1 0 -1.77 -5.35 -7.90 -7.26
Smp_114910.1 0 -3.08 -7.52 -7.91 -7.70
Smp_120920.3 0 -1.87 -3.40 -3.67 -4.06
Smp_125440.1 0 -4.16 -3.48 -3.28 -4.46
Smp_129190.1 0 -4.25 -6.94 -3.48 -4.65
Smp_133770.1 0 -4.18 -7.68 -11.38 -11.45
Smp_135250.1 0 -4.50 -7.60 -5.52 -7.87
Smp_139250.1 0 -4.34 -6.53 -2.10 -4.27
Smp_145340.1 0 -2.62 -9.51 -6.28 -7.06
Smp_148800.1 0 -3.26 -5.77 -5.61 -4.70
Smp_149190.1 0 -3.08 -5.94 -9.47 -9.18
Smp_150690.2 0 -2.07 -12.58 -12.58 -12.58
Smp_152260.1 0 -3.17 -4.39 -4.03 -4.71
Smp_153240.1 0 -4.59 -8.67 -11.23 -11.04
Smp_154020.1 0 -1.89 -2.51 -3.88 -5.45
Smp_154300.1 0 -4.18 -5.59 -3.13 -4.15
Smp_157310.1 0 -3.02 -6.78 -4.07 -5.91
Smp_159190.1 0 -3.70 -3.60 -3.46 -3.88
Smp_169190.1 0 -3.08 -5.99 -19.20 -16.89
Smp_178240.1 0 -3.79 -9.33 -8.87 -11.00
Smp_179640.1 0 -2.62 -9.51 -6.28 -7.06
Smp_183420.1 0 -2.62 -9.51 -6.28 -7.06
Smp_184460.1 0 -2.24 -5.26 -13.63 -13.63
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83
Smp_186610.1 0 -3.09 -6.92 -6.26 -7.07
Smp_190320.1 0 -2.26 -2.78 -8.01 -9.33
Smp_190590.1 0 -2.59 -2.98 -7.31 -8.64
Smp_192880.1 0 -2.57 -3.41 -5.24 -6.71
Smp_194040.1 0 -2.17 -6.63 -5.72 -6.95
Smp_202700.1 0 -2.94 -2.50 -4.90 -6.94
Smp_205190.1 0 -5.03 -3.88 -4.78 -3.78
Smp_205900.1 0 -3.56 -6.12 -5.80 -6.36
Smp_205970.1 0 -3.84 -6.54 -6.54 -6.54
Smp_206150.1 0 -1.95 -4.12 -11.47 -11.47
Smp_214150.1 0 -3.99 -7.32 -3.18 -5.90

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_178240.1 SmLINC02039-IBu 0.90 2.55e-06 1.00e-04
Smp_178240.1 SmLINC05670-IBu 0.92 7.48e-07 4.35e-05
Smp_002640.1 Smp_178240.1 0.92 5.60e-07 3.55e-05
Smp_003770.1 Smp_178240.1 0.95 5.17e-08 6.91e-06
Smp_005860.1 Smp_178240.1 0.93 4.61e-07 3.10e-05
Smp_178240.1 Smp_005860.3 0.93 3.29e-07 2.46e-05
Smp_006560.1 Smp_178240.1 0.98 6.79e-11 9.14e-08
Smp_009390.1 Smp_178240.1 0.92 8.28e-07 4.67e-05
Smp_178240.1 Smp_009650.2 0.95 3.44e-08 5.24e-06
Smp_178240.1 Smp_018880.1 0.95 5.40e-08 7.12e-06
Smp_019750.2 Smp_178240.1 0.95 4.63e-08 6.41e-06
Smp_178240.1 Smp_021730.1 0.91 1.56e-06 7.33e-05
Smp_178240.1 Smp_022430.1 0.98 5.63e-11 8.11e-08
Smp_178240.1 Smp_028990.2 0.91 1.31e-06 6.47e-05
Smp_178240.1 Smp_033610.1 0.94 8.76e-08 9.88e-06
Smp_036400.2 Smp_178240.1 0.91 1.46e-06 6.98e-05
Smp_038560.6 Smp_178240.1 0.98 3.43e-11 5.96e-08
Smp_042160.1 Smp_178240.1 0.96 1.11e-08 2.44e-06
Smp_042270.1 Smp_178240.1 0.92 7.00e-07 4.15e-05
Smp_178240.1 Smp_046090.1 0.95 1.83e-08 3.42e-06
Smp_178240.1 Smp_052060.1 0.93 3.92e-07 2.77e-05
Smp_178240.1 Smp_053700.1 0.91 1.62e-06 7.52e-05
Smp_178240.1 Smp_057060.1 0.96 4.66e-09 1.37e-06
Smp_178240.1 Smp_057790.1 0.93 2.04e-07 1.77e-05
Smp_178240.1 Smp_059930.1 0.96 9.85e-09 2.25e-06
Smp_061870.1 Smp_178240.1 0.93 3.03e-07 2.32e-05
Smp_061940.1 Smp_178240.1 0.97 6.37e-10 3.81e-07
Smp_178240.1 Smp_065580.1 0.91 2.31e-06 9.62e-05
Smp_178240.1 Smp_074560.1 0.91 1.43e-06 6.86e-05
Smp_074570.1 Smp_178240.1 0.90 3.13e-06 1.00e-04
Smp_178240.1 Smp_085290.3 0.92 1.15e-06 5.90e-05
Smp_097490.1 Smp_178240.1 0.91 1.32e-06 6.51e-05
Smp_099420.1 Smp_178240.1 0.94 6.22e-08 7.83e-06
Smp_102670.1 Smp_178240.1 0.96 7.20e-09 1.83e-06
Smp_178240.1 Smp_105610.1 0.98 1.11e-11 2.92e-08
Smp_106390.1 Smp_178240.1 0.95 3.96e-08 5.77e-06
Smp_178240.1 Smp_108050.1 0.93 4.85e-07 3.21e-05
Smp_178240.1 Smp_113710.1 0.95 1.52e-08 3.02e-06
Smp_178240.1 Smp_113760.1 0.92 8.74e-07 4.85e-05
Smp_114910.1 Smp_178240.1 0.90 3.72e-06 1.00e-04
Smp_178240.1 Smp_120920.3 0.91 1.85e-06 8.24e-05
Smp_125440.1 Smp_178240.1 0.94 1.33e-07 1.31e-05
Smp_178240.1 Smp_129190.1 0.94 9.26e-08 1.02e-05
Smp_178240.1 Smp_133770.1 0.98 5.37e-12 1.87e-08
Smp_178240.1 Smp_135250.1 0.96 4.32e-09 1.31e-06
Smp_139250.1 Smp_178240.1 0.90 2.71e-06 1.00e-04
Smp_145340.1 Smp_178240.1 0.92 8.35e-07 4.70e-05
Smp_148800.1 Smp_178240.1 0.98 1.43e-10 1.46e-07
Smp_149190.1 Smp_178240.1 0.94 1.05e-07 1.12e-05
Smp_150690.2 Smp_178240.1 0.93 3.43e-07 2.53e-05
Smp_152260.1 Smp_178240.1 0.92 1.12e-06 5.80e-05
Smp_178240.1 Smp_153240.1 0.99 4.78e-13 4.17e-09
Smp_154020.1 Smp_178240.1 0.91 1.86e-06 8.29e-05
Smp_154300.1 Smp_178240.1 0.96 3.48e-09 1.14e-06
Smp_178240.1 Smp_157310.1 0.97 7.19e-10 4.12e-07
Smp_178240.1 Smp_159190.1 0.92 1.06e-06 5.56e-05
Smp_178240.1 Smp_169190.1 0.94 1.89e-07 1.67e-05
Smp_178240.1 Smp_179640.1 0.92 8.35e-07 4.70e-05
Smp_178240.1 Smp_183420.1 0.92 8.35e-07 4.70e-05
Smp_178240.1 Smp_184460.1 0.95 2.43e-08 4.14e-06
Smp_178240.1 Smp_185360.1 0.97 8.53e-10 4.60e-07
Smp_178240.1 Smp_186610.1 0.92 5.60e-07 3.55e-05
Smp_190320.1 Smp_178240.1 0.90 2.98e-06 1.00e-04
Smp_178240.1 Smp_190590.1 0.91 1.54e-06 7.25e-05
Smp_192880.1 Smp_178240.1 0.95 5.33e-08 7.05e-06
Smp_178240.1 Smp_194040.1 0.95 2.39e-08 4.09e-06
Smp_202700.1 Smp_178240.1 0.94 1.69e-07 1.55e-05
Smp_205190.1 Smp_178240.1 0.96 5.37e-09 1.51e-06
Smp_178240.1 Smp_205900.1 0.97 1.49e-09 6.60e-07
Smp_205970.1 Smp_178240.1 0.90 3.77e-06 1.00e-04
Smp_206150.1 Smp_178240.1 0.90 3.99e-06 1.00e-04
Smp_178240.1 Smp_214150.1 0.92 6.18e-07 3.81e-05