Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_178070.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04769-IBu 0 1.36 2.94 5.73 3.10
SmLINC05009-IBu 0 0.41 -0.30 3.78 1.52
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC05632-IBu 0 4.56 6.06 7.28 6.53
SmLINC05870-IBu 0 0.25 4.65 5.77 4.71
SmLINC06205-IBu 0 0.00 7.73 9.47 9.16
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06418-IBu 0 -2.45 2.43 6.45 5.75
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_178070.1 0 2.15 4.53 5.96 5.70

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_178070.1 SmLINC01066-IBu 0.82 1.00e-04 2.10e-03
Smp_178070.1 SmLINC01746-IBu 0.84 8.45e-05 1.20e-03
Smp_178070.1 SmLINC03693-IBu 0.83 9.24e-05 1.30e-03
Smp_178070.1 SmLINC04432-IBu 0.85 5.90e-05 9.00e-04
Smp_178070.1 SmLINC04475-IBu 0.88 9.18e-06 2.00e-04
Smp_178070.1 SmLINC04769-IBu 0.80 3.00e-04 3.30e-03
Smp_178070.1 SmLINC05009-IBu 0.80 3.00e-04 3.10e-03
Smp_178070.1 SmLINC05258-IBu 0.82 1.00e-04 1.80e-03
Smp_178070.1 SmLINC05632-IBu 0.88 8.86e-06 2.00e-04
Smp_178070.1 SmLINC05870-IBu 0.89 5.01e-06 1.00e-04
Smp_178070.1 SmLINC06205-IBu 0.82 1.00e-04 1.70e-03
Smp_178070.1 SmLINC06221-IBu 0.87 2.12e-05 4.00e-04
Smp_178070.1 SmLINC06418-IBu 0.88 1.39e-05 3.00e-04
Smp_178070.1 SmLINC06449-IBu 0.80 3.00e-04 3.10e-03
Smp_178070.1 SmLINC06543-IBu 0.82 1.00e-04 2.00e-03