Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_178030.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00893-IBu 0 1.08 -1.15 -3.04 -4.37
SmLINC01462-IBu 0 0.69 -0.90 -3.10 -4.62
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC03056-IBu 0 1.41 -1.34 -4.42 -9.40
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC04106-IBu 0 1.60 -0.86 -5.26 -10.78
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
Smp_178030.1 0 0.35 -4.71 -5.00 -8.33

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_178030.1 SmLINC00037-IBu 0.83 9.82e-05 1.30e-03
Smp_178030.1 SmLINC00133-IBu 0.81 2.00e-04 2.30e-03
Smp_178030.1 SmLINC00282-IBu 0.85 5.94e-05 9.00e-04
Smp_178030.1 SmLINC00893-IBu 0.81 2.00e-04 2.60e-03
Smp_178030.1 SmLINC01462-IBu 0.81 1.00e-04 2.20e-03
Smp_178030.1 SmLINC01637-IBu 0.82 1.00e-04 2.00e-03
Smp_178030.1 SmLINC03056-IBu 0.85 4.50e-05 7.00e-04
Smp_178030.1 SmLINC03848-IBu 0.84 8.67e-05 1.20e-03
Smp_178030.1 SmLINC04106-IBu 0.82 1.00e-04 1.90e-03
Smp_178030.1 SmLINC04271-IBu 0.80 2.00e-04 3.00e-03
Smp_178030.1 SmLINC05284-IBu 0.82 1.00e-04 1.90e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_112090.1 0 0.15 -7.44 -10.1 -10.10
Smp_178030.1 0 0.35 -4.71 -5.0 -8.33

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_112090.1 Smp_178030.1 0.9 4.47e-06 1.00e-04