Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_177900.1 Data

Correlation between Smp_177900.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_177900.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02545-IBu 0 3.54 1.98 7.53 8.45
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC03108-IBu 0 1.12 -0.64 3.64 3.93
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
SmLINC06489-IBu 0 0.79 0.67 -4.22 -4.27
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
Smp_177900.1 0 -0.46 -0.44 -3.24 -4.66

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_177900.1 SmLINC00001-IBu -0.91 1.21e-06 5.90e-05
Smp_177900.1 SmLINC00004-IBu -0.94 1.39e-07 1.29e-05
Smp_177900.1 SmLINC00294-IBu 0.85 4.27e-05 7.00e-04
Smp_177900.1 SmLINC00369-IBu -0.91 2.50e-06 9.85e-05
Smp_177900.1 SmLINC00376-IBu -0.86 2.87e-05 5.00e-04
Smp_177900.1 SmLINC00525-IBu -0.92 9.61e-07 4.99e-05
Smp_177900.1 SmLINC00548-IBu -0.81 1.00e-04 2.30e-03
Smp_177900.1 SmLINC00633-IBu -0.85 5.14e-05 8.00e-04
Smp_177900.1 SmLINC01084-IBu -0.94 1.74e-07 1.50e-05
Smp_177900.1 SmLINC01122-IBu -0.85 4.97e-05 8.00e-04
Smp_177900.1 SmLINC01431-IBu -0.93 1.99e-07 1.65e-05
Smp_177900.1 SmLINC01432-IBu -0.82 1.00e-04 1.70e-03
Smp_177900.1 SmLINC01520-IBu -0.83 1.00e-04 1.50e-03
Smp_177900.1 SmLINC01538-IBu -0.81 1.00e-04 2.20e-03
Smp_177900.1 SmLINC01569-IBu -0.84 8.65e-05 1.20e-03
Smp_177900.1 SmLINC01733-IBu -0.82 1.00e-04 1.90e-03
Smp_177900.1 SmLINC02029-IBu -0.80 2.00e-04 3.10e-03
Smp_177900.1 SmLINC02084-IBu -0.92 1.16e-06 5.72e-05
Smp_177900.1 SmLINC02376-IBu -0.83 1.00e-04 1.50e-03
Smp_177900.1 SmLINC02394-IBu -0.89 5.85e-06 1.00e-04
Smp_177900.1 SmLINC02539-IBu -0.87 1.58e-05 3.00e-04
Smp_177900.1 SmLINC02540-IBu -0.83 1.00e-04 1.50e-03
Smp_177900.1 SmLINC02545-IBu -0.84 6.38e-05 1.00e-03
Smp_177900.1 SmLINC02546-IBu -0.88 1.48e-05 3.00e-04
Smp_177900.1 SmLINC02577-IBu -0.84 7.56e-05 1.10e-03
Smp_177900.1 SmLINC03108-IBu -0.83 1.00e-04 1.50e-03
Smp_177900.1 SmLINC03326-IBu -0.85 5.50e-05 9.00e-04
Smp_177900.1 SmLINC03693-IBu -0.80 2.00e-04 3.10e-03
Smp_177900.1 SmLINC03849-IBu 0.81 2.00e-04 2.40e-03
Smp_177900.1 SmLINC03927-IBu -0.87 1.79e-05 4.00e-04
Smp_177900.1 SmLINC04235-IBu -0.83 1.00e-04 1.40e-03
Smp_177900.1 SmLINC04421-IBu -0.94 6.18e-08 7.37e-06
Smp_177900.1 SmLINC04423-IBu -0.91 2.26e-06 9.16e-05
Smp_177900.1 SmLINC04478-IBu -0.86 2.93e-05 5.00e-04
Smp_177900.1 SmLINC04521-IBu -0.86 2.97e-05 5.00e-04
Smp_177900.1 SmLINC04684-IBu -0.82 1.00e-04 2.10e-03
Smp_177900.1 SmLINC05147-IBu -0.86 2.95e-05 5.00e-04
Smp_177900.1 SmLINC05258-IBu -0.80 2.00e-04 2.90e-03
Smp_177900.1 SmLINC05289-IBu -0.91 2.04e-06 8.52e-05
Smp_177900.1 SmLINC05604-IBu -0.93 4.04e-07 2.71e-05
Smp_177900.1 SmLINC06024-IBu -0.95 5.34e-08 6.67e-06
Smp_177900.1 SmLINC06145-IBu -0.85 4.66e-05 8.00e-04
Smp_177900.1 SmLINC06489-IBu 0.82 1.00e-04 1.70e-03
Smp_177900.1 SmLINC06490-IBu 0.92 7.33e-07 4.11e-05

Correlation between Smp_177900.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_015850.2 0 -0.79 -1.42 -13.43 -13.43
Smp_024180.1 0 3.08 4.23 10.66 11.72
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_086600.1 0 -0.12 -0.81 -6.58 -10.32
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_172960.1 0 3.27 6.54 14.72 15.13
Smp_177900.1 0 -0.46 -0.44 -3.24 -4.66
Smp_184180.1 0 -0.01 -0.17 -13.99 -13.99
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_203090.1 0 0.00 0.00 10.35 10.67
Smp_212510.1 0 -0.05 -0.36 -7.08 -10.79

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_177900.1 Smp_015850.2 0.90 4.22e-06 1.00e-04
Smp_177900.1 Smp_024180.1 -0.90 3.19e-06 1.00e-04
Smp_177900.1 Smp_024180.2 -0.93 2.21e-07 1.87e-05
Smp_177900.1 Smp_033260.1 -0.96 2.95e-09 1.02e-06
Smp_038870.2 Smp_177900.1 -0.97 9.91e-10 5.06e-07
Smp_177900.1 Smp_040970.2 -0.91 2.34e-06 9.71e-05
Smp_177900.1 Smp_050350.3 -0.95 1.86e-08 3.46e-06
Smp_177900.1 Smp_052280.2 -0.90 3.22e-06 1.00e-04
Smp_177900.1 Smp_056460.1 -0.96 1.35e-08 2.79e-06
Smp_177900.1 Smp_079420.1 -0.95 2.44e-08 4.15e-06
Smp_177900.1 Smp_086600.1 0.92 9.26e-07 5.05e-05
Smp_177900.1 Smp_094050.1 -0.93 4.93e-07 3.25e-05
Smp_177900.1 Smp_095410.1 -0.92 7.75e-07 4.46e-05
Smp_177900.1 Smp_137000.2 -0.95 3.64e-08 5.44e-06
Smp_177900.1 Smp_137810.1 -0.92 1.02e-06 5.43e-05
Smp_177900.1 Smp_140720.1 -0.90 3.99e-06 1.00e-04
Smp_177900.1 Smp_155570.1 -0.93 4.30e-07 2.96e-05
Smp_177900.1 Smp_156930.1 -0.94 1.41e-07 1.37e-05
Smp_177900.1 Smp_172960.1 -0.92 6.24e-07 3.83e-05
Smp_177900.1 Smp_184180.1 0.94 9.52e-08 1.04e-05
Smp_177900.1 Smp_192780.1 -0.94 6.53e-08 8.10e-06
Smp_194860.1 Smp_177900.1 -0.94 7.43e-08 8.84e-06
Smp_177900.1 Smp_202610.1 -0.91 2.17e-06 9.23e-05
Smp_177900.1 Smp_203090.1 -0.91 1.99e-06 8.66e-05
Smp_177900.1 Smp_212510.1 0.97 5.74e-10 3.57e-07