Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_177580.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
Smp_177580.1 0 3.28 2.12 11.83 11.79

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_177580.1 SmLINC00633-IBu 0.82 1.00e-04 2.10e-03
Smp_177580.1 SmLINC01432-IBu 0.90 4.50e-06 1.00e-04
Smp_177580.1 SmLINC03542-IBu 0.80 3.00e-04 3.20e-03
Smp_177580.1 SmLINC04421-IBu 0.80 2.00e-04 3.00e-03
Smp_177580.1 SmLINC04478-IBu 0.81 1.00e-04 2.30e-03
Smp_177580.1 SmLINC04521-IBu 0.85 4.68e-05 8.00e-04
Smp_177580.1 SmLINC05147-IBu 0.82 1.00e-04 2.10e-03
Smp_177580.1 SmLINC06145-IBu 0.87 2.41e-05 5.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC03103-IBu 0 0.00 0.00 7.82 8.26
SmLINC05327-IBu 0 -0.07 -0.20 4.04 3.29
SmLINC05961-IBu 0 0.89 0.00 11.11 10.79
Smp_051920.1 0 0.00 0.00 7.75 7.45
Smp_100450.1 0 0.44 0.15 6.69 7.24
Smp_107750.1 0 0.44 0.15 6.69 7.24
Smp_108010.1 0 0.44 0.15 6.69 7.24
Smp_116960.1 0 0.44 0.15 6.69 7.24
Smp_123550.1 0 2.43 2.16 11.52 11.47
Smp_166860.1 0 0.00 0.00 10.18 10.19
Smp_177580.1 0 3.28 2.12 11.83 11.79
Smp_184280.1 0 -1.39 -1.26 5.35 5.21

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_177580.1 SmLINC01432-IBu 0.90 4.50e-06 1.00e-04
Smp_177580.1 SmLINC03103-IBu 0.94 1.66e-07 1.53e-05
Smp_177580.1 SmLINC05327-IBu 0.90 3.82e-06 1.00e-04
Smp_177580.1 SmLINC05961-IBu 0.90 2.68e-06 1.00e-04
Smp_177580.1 Smp_051920.1 0.93 3.44e-07 2.53e-05
Smp_177580.1 Smp_100450.1 0.93 4.02e-07 2.82e-05
Smp_177580.1 Smp_107750.1 0.93 4.02e-07 2.82e-05
Smp_177580.1 Smp_108010.1 0.93 4.02e-07 2.82e-05
Smp_116960.1 Smp_177580.1 0.93 4.02e-07 2.82e-05
Smp_177580.1 Smp_123550.1 0.91 1.44e-06 6.91e-05
Smp_166860.1 Smp_177580.1 0.94 1.76e-07 1.59e-05
Smp_177580.1 Smp_184280.1 0.96 2.78e-09 9.85e-07