Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_177520.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02038-IBu 0 -0.52 -1.85 -8.62 -8.62
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_177520.1 0 -1.05 -1.72 -9.36 -8.37

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_177520.1 SmLINC02038-IBu 0.80 2.00e-04 2.80e-03
Smp_177520.1 SmLINC02255-IBu 0.81 1.00e-04 2.30e-03
Smp_177520.1 SmLINC02657-IBu 0.80 3.00e-04 3.40e-03
Smp_177520.1 SmLINC03769-IBu 0.83 1.00e-04 1.50e-03
Smp_177520.1 SmLINC05284-IBu 0.81 2.00e-04 2.40e-03
Smp_177520.1 SmLINC06890-IBu 0.83 8.90e-05 1.20e-03
Smp_177520.1 SmLINC06903-IBu 0.82 1.00e-04 2.10e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_177520.1 0 -1.05 -1.72 -9.36 -8.37
Smp_182890.1 0 -1.33 -1.67 -9.07 -10.72
Smp_186130.1 0 -2.11 -1.47 -10.40 -10.85
Smp_192890.1 0 -1.10 -2.06 -12.83 -12.83

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_182890.1 Smp_177520.1 0.90 3.53e-06 1.00e-04
Smp_177520.1 Smp_186130.1 0.92 6.72e-07 4.03e-05
Smp_192890.1 Smp_177520.1 0.98 6.91e-12 2.18e-08