Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_176430.2 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
Smp_176430.2 0 9.09 10.43 10.57 10.62

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_176430.2 SmLINC03848-IBu -0.73 1.80e-03 1.01e-02
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC05632-IBu 0 4.56 6.06 7.28 6.53
SmLINC05990-IBu 0 9.67 10.42 11.79 11.49
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
Smp_176430.2 0 9.09 10.43 10.57 10.62

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_176430.2 SmLINC05632-IBu 0.90 3.50e-06 1.00e-04
Smp_176430.2 SmLINC05990-IBu 0.87 1.95e-05 4.00e-04
Smp_176430.2 SmLINC06128-IBu -0.84 8.14e-05 1.20e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC05632-IBu 0 4.56 6.06 7.28 6.53
SmLINC06240-IBu 0 -1.33 -10.34 -6.03 -6.09
Smp_040720.3 0 8.84 10.93 11.66 10.78
Smp_051230.3 0 -1.49 -4.66 -6.27 -4.15
Smp_055640.1 0 1.44 3.41 4.52 4.57
Smp_139280.1 0 4.38 5.26 6.40 5.71
Smp_142080.1 0 1.40 2.62 4.98 4.98
Smp_157390.1 0 3.34 4.15 5.22 5.62
Smp_160000.2 0 6.42 8.33 8.49 8.70
Smp_176430.2 0 9.09 10.43 10.57 10.62
Smp_203390.1 0 1.08 3.39 4.79 4.84

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_176430.2 SmLINC05632-IBu 0.90 3.50e-06 1.00e-04
Smp_176430.2 SmLINC06240-IBu -0.90 2.60e-06 1.00e-04
Smp_176430.2 Smp_040720.3 0.92 5.58e-07 3.55e-05
Smp_176430.2 Smp_051230.3 -0.90 3.80e-06 1.00e-04
Smp_055640.1 Smp_176430.2 0.93 3.62e-07 2.63e-05
Smp_139280.1 Smp_176430.2 0.90 3.21e-06 1.00e-04
Smp_142080.1 Smp_176430.2 0.91 1.63e-06 7.54e-05
Smp_176430.2 Smp_157390.1 0.90 3.49e-06 1.00e-04
Smp_176430.2 Smp_160000.2 0.91 2.34e-06 9.74e-05
Smp_176430.2 Smp_203390.1 0.90 3.93e-06 1.00e-04