Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_176230.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00026-IBu 0 1.41 -0.25 -3.45 -4.99
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00893-IBu 0 1.08 -1.15 -3.04 -4.37
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01429-IBu 0 1.94 -0.56 -4.06 -6.10
SmLINC01462-IBu 0 0.69 -0.90 -3.10 -4.62
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC01979-IBu 0 1.86 0.63 -5.36 -5.36
SmLINC03111-IBu 0 3.25 1.95 -5.91 -5.91
SmLINC03116-IBu 0 3.51 0.92 -2.09 -5.82
SmLINC03395-IBu 0 1.75 0.29 -4.35 -2.74
SmLINC03443-IBu 0 2.85 1.67 -0.40 -9.21
SmLINC03486-IBu 0 0.84 -0.08 -7.36 -7.36
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC04074-IBu 0 7.29 6.66 0.00 0.00
SmLINC04075-IBu 0 0.82 -1.03 -4.58 -4.73
SmLINC04129-IBu 0 2.02 -0.05 -5.02 -3.35
SmLINC04144-IBu 0 2.82 -0.04 -0.46 -2.35
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
SmLINC05178-IBu 0 3.85 -0.08 -1.72 -5.31
SmLINC05840-IBu 0 1.40 -1.20 -2.41 -3.85
SmLINC05887-IBu 0 1.98 -0.51 -2.69 -3.80
SmLINC05888-IBu 0 4.50 1.82 -0.36 -2.39
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06138-IBu 0 2.13 -1.25 -2.27 -2.28
SmLINC06436-IBu 0 7.76 4.53 3.89 -2.06
Smp_176230.2 0 0.48 -0.91 -5.65 -11.30

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_176230.2 SmLINC00026-IBu 0.91 1.25e-06 6.04e-05
Smp_176230.2 SmLINC00037-IBu 0.82 1.00e-04 1.80e-03
Smp_176230.2 SmLINC00294-IBu 0.88 1.07e-05 2.00e-04
Smp_176230.2 SmLINC00893-IBu 0.90 2.99e-06 1.00e-04
Smp_176230.2 SmLINC01084-IBu -0.81 2.00e-04 2.70e-03
Smp_176230.2 SmLINC01429-IBu 0.88 9.18e-06 2.00e-04
Smp_176230.2 SmLINC01462-IBu 0.85 4.34e-05 7.00e-04
Smp_176230.2 SmLINC01486-IBu 0.81 1.00e-04 2.20e-03
Smp_176230.2 SmLINC01637-IBu 0.83 1.00e-04 1.50e-03
Smp_176230.2 SmLINC01979-IBu 0.81 2.00e-04 2.50e-03
Smp_176230.2 SmLINC03111-IBu 0.89 7.91e-06 2.00e-04
Smp_176230.2 SmLINC03116-IBu 0.86 3.58e-05 6.00e-04
Smp_176230.2 SmLINC03395-IBu 0.89 7.09e-06 2.00e-04
Smp_176230.2 SmLINC03443-IBu 0.91 2.20e-06 9.00e-05
Smp_176230.2 SmLINC03486-IBu 0.86 2.89e-05 5.00e-04
Smp_176230.2 SmLINC03849-IBu 0.83 1.00e-04 1.40e-03
Smp_176230.2 SmLINC04074-IBu 0.82 1.00e-04 1.90e-03
Smp_176230.2 SmLINC04075-IBu 0.83 1.00e-04 1.50e-03
Smp_176230.2 SmLINC04129-IBu 0.91 1.71e-06 7.52e-05
Smp_176230.2 SmLINC04144-IBu 0.86 2.98e-05 5.00e-04
Smp_176230.2 SmLINC04271-IBu 0.92 1.10e-06 5.51e-05
Smp_176230.2 SmLINC05178-IBu 0.84 6.77e-05 1.00e-03
Smp_176230.2 SmLINC05840-IBu 0.91 2.19e-06 8.98e-05
Smp_176230.2 SmLINC05887-IBu 0.88 1.23e-05 3.00e-04
Smp_176230.2 SmLINC05888-IBu 0.80 2.00e-04 2.90e-03
Smp_176230.2 SmLINC06024-IBu -0.84 7.62e-05 1.10e-03
Smp_176230.2 SmLINC06138-IBu 0.87 1.91e-05 4.00e-04
Smp_176230.2 SmLINC06436-IBu 0.84 6.64e-05 1.00e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00026-IBu 0 1.41 -0.25 -3.45 -4.99
SmLINC00060-IBu 0 0.94 -0.34 -3.66 -3.57
SmLINC00893-IBu 0 1.08 -1.15 -3.04 -4.37
SmLINC00948-IBu 0 0.38 -1.34 -3.69 -5.26
SmLINC01023-IBu 0 2.08 -0.18 -2.05 -2.12
SmLINC01053-IBu 0 0.36 -0.58 -11.08 -11.08
SmLINC01085-IBu 0 1.03 -1.97 -3.96 -8.11
SmLINC01096-IBu 0 0.65 -0.50 -3.20 -5.48
SmLINC01179-IBu 0 0.87 0.04 -3.40 -3.45
SmLINC01272-IBu 0 1.03 -1.11 -5.32 -3.27
SmLINC01977-IBu 0 0.81 -1.32 -2.61 -5.10
SmLINC02602-IBu 0 0.73 -0.70 -3.82 -3.31
SmLINC02619-IBu 0 0.93 -1.12 -9.65 -4.32
SmLINC02635-IBu 0 0.72 -2.44 -4.55 -4.79
SmLINC02652-IBu 0 1.83 -0.68 -3.03 -3.58
SmLINC03086-IBu 0 0.21 -1.77 -4.72 -4.47
SmLINC03113-IBu 0 3.56 1.45 -5.86 -5.86
SmLINC03158-IBu 0 1.02 -0.42 -1.87 -7.15
SmLINC03178-IBu 0 1.26 0.38 -7.16 -2.73
SmLINC03443-IBu 0 2.85 1.67 -0.40 -9.21
SmLINC04011-IBu 0 0.46 -0.74 -3.28 -4.04
SmLINC04046-IBu 0 0.73 -1.28 -4.08 -3.88
SmLINC04129-IBu 0 2.02 -0.05 -5.02 -3.35
SmLINC04179-IBu 0 2.76 1.83 -2.20 -2.09
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
SmLINC04313-IBu 0 0.55 -0.82 -4.39 -4.56
SmLINC04427-IBu 0 0.99 -1.00 -3.69 -5.04
SmLINC04462-IBu 0 1.34 0.29 -3.67 -6.63
SmLINC04965-IBu 0 0.16 -1.01 -3.32 -4.58
SmLINC05297-IBu 0 -0.00 -1.64 -3.66 -7.01
SmLINC05590-IBu 0 0.90 -1.11 -3.64 -6.13
SmLINC05674-IBu 0 0.71 -0.52 -4.93 -3.47
SmLINC05840-IBu 0 1.40 -1.20 -2.41 -3.85
SmLINC05906-IBu 0 0.43 -0.01 -5.65 -6.57
SmLINC06507-IBu 0 1.77 -0.59 -4.31 -4.86
SmLINC06748-IBu 0 0.48 -0.43 -2.92 -4.67
SmLINC06962-IBu 0 -0.14 -1.06 -4.74 -5.63
Smp_002820.3 0 -0.31 -1.11 -4.63 -4.63
Smp_002920.1 0 0.04 -0.86 -3.56 -4.70
Smp_005080.1 0 0.96 -0.03 -3.26 -4.08
Smp_014400.1 0 -0.14 -0.99 -4.80 -5.29
Smp_015190.1 0 0.66 -0.56 -4.33 -5.46
Smp_017080.1 0 0.12 -0.36 -3.91 -3.88
Smp_021460.1 0 1.05 -0.56 -1.99 -6.60
Smp_021870.1 0 -0.42 -1.33 -4.52 -4.56
Smp_032480.1 0 -0.33 -0.97 -4.24 -4.52
Smp_033930.1 0 0.15 -3.24 -4.08 -3.67
Smp_034980.1 0 0.00 -0.47 -4.42 -5.42
Smp_035020.1 0 1.34 -0.55 -3.54 -8.45
Smp_045950.1 0 0.07 -1.04 -4.82 -3.27
Smp_048160.1 0 0.07 -1.17 -3.73 -4.00
Smp_059210.7 0 0.04 -0.34 -3.63 -6.60
Smp_060900.1 0 -0.42 -1.33 -4.11 -3.92
Smp_078550.1 0 -0.05 -0.57 -4.38 -4.91
Smp_079280.1 0 1.10 0.35 -2.96 -4.05
Smp_084210.1 0 0.94 -0.62 -4.01 -2.94
Smp_093740.2 0 1.50 0.51 -2.09 -4.86
Smp_105910.1 0 -0.41 -0.91 -4.58 -4.76
Smp_129330.1 0 -0.37 -1.05 -3.94 -4.37
Smp_136390.1 0 -0.66 -2.03 -5.71 -5.55
Smp_138890.1 0 2.00 0.89 -2.07 -3.06
Smp_142260.1 0 0.06 -0.92 -4.07 -4.74
Smp_142460.1 0 1.61 0.48 -3.34 -3.60
Smp_157750.1 0 0.25 -0.37 -3.45 -4.12
Smp_158310.1 0 -0.00 -0.69 -4.11 -5.43
Smp_159150.2 0 -0.33 -1.24 -3.88 -4.34
Smp_159350.1 0 0.30 -0.77 -3.51 -3.83
Smp_161230.1 0 0.25 -1.38 -5.05 -7.28
Smp_164270.1 0 1.19 0.27 -2.73 -3.35
Smp_171610.1 0 0.35 -0.62 -4.59 -3.11
Smp_176230.2 0 0.48 -0.91 -5.65 -11.30
Smp_179670.1 0 1.45 -1.30 -8.21 -9.30
Smp_196000.1 0 -0.33 -2.00 -8.40 -5.93
Smp_196680.1 0 1.62 -1.20 -4.44 -3.36
Smp_198650.1 0 -0.01 -1.08 -4.05 -4.59
Smp_201230.1 0 1.72 -0.34 -3.72 -2.51
Smp_205030.1 0 0.40 -0.18 -3.74 -3.55

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_176230.2 SmLINC00026-IBu 0.91 1.25e-06 6.27e-05
Smp_176230.2 SmLINC00060-IBu 0.98 3.53e-11 6.06e-08
Smp_176230.2 SmLINC00893-IBu 0.90 2.99e-06 1.00e-04
Smp_176230.2 SmLINC00948-IBu 0.92 7.55e-07 4.38e-05
Smp_176230.2 SmLINC01023-IBu 0.91 1.67e-06 7.66e-05
Smp_176230.2 SmLINC01053-IBu 0.90 2.99e-06 1.00e-04
Smp_176230.2 SmLINC01085-IBu 0.91 1.48e-06 7.03e-05
Smp_176230.2 SmLINC01096-IBu 0.96 2.49e-09 9.17e-07
Smp_176230.2 SmLINC01179-IBu 0.93 4.33e-07 2.97e-05
Smp_176230.2 SmLINC01272-IBu 0.95 5.03e-08 6.78e-06
Smp_176230.2 SmLINC01977-IBu 0.95 2.26e-08 3.94e-06
Smp_176230.2 SmLINC02602-IBu 0.93 3.27e-07 2.45e-05
Smp_176230.2 SmLINC02619-IBu 0.93 2.47e-07 2.01e-05
Smp_176230.2 SmLINC02635-IBu 0.91 1.41e-06 6.81e-05
Smp_176230.2 SmLINC02652-IBu 0.90 4.29e-06 1.00e-04
Smp_176230.2 SmLINC03086-IBu 0.90 2.94e-06 1.00e-04
Smp_176230.2 SmLINC03113-IBu 0.90 4.77e-06 1.00e-04
Smp_176230.2 SmLINC03158-IBu 0.90 2.60e-06 1.00e-04
Smp_176230.2 SmLINC03178-IBu 0.92 9.34e-07 5.08e-05
Smp_176230.2 SmLINC03443-IBu 0.91 2.20e-06 9.31e-05
Smp_176230.2 SmLINC04011-IBu 0.90 3.89e-06 1.00e-04
Smp_176230.2 SmLINC04046-IBu 0.97 1.28e-09 5.97e-07
Smp_176230.2 SmLINC04129-IBu 0.91 1.71e-06 7.79e-05
Smp_176230.2 SmLINC04179-IBu 0.90 4.09e-06 1.00e-04
Smp_176230.2 SmLINC04271-IBu 0.92 1.10e-06 5.72e-05
Smp_176230.2 SmLINC04313-IBu 0.90 3.21e-06 1.00e-04
Smp_176230.2 SmLINC04427-IBu 0.94 1.23e-07 1.24e-05
Smp_176230.2 SmLINC04462-IBu 0.91 1.25e-06 6.26e-05
Smp_176230.2 SmLINC04965-IBu 0.96 5.93e-09 1.61e-06
Smp_176230.2 SmLINC05297-IBu 0.91 1.50e-06 7.11e-05
Smp_176230.2 SmLINC05590-IBu 0.90 2.99e-06 1.00e-04
Smp_176230.2 SmLINC05674-IBu 0.90 2.94e-06 1.00e-04
Smp_176230.2 SmLINC05840-IBu 0.91 2.19e-06 9.29e-05
Smp_176230.2 SmLINC05906-IBu 0.90 3.85e-06 1.00e-04
Smp_176230.2 SmLINC06507-IBu 0.91 1.75e-06 7.92e-05
Smp_176230.2 SmLINC06748-IBu 0.93 2.64e-07 2.11e-05
Smp_176230.2 SmLINC06962-IBu 0.93 2.53e-07 2.05e-05
Smp_002820.3 Smp_176230.2 0.93 3.67e-07 2.65e-05
Smp_002920.1 Smp_176230.2 0.92 1.14e-06 5.88e-05
Smp_176230.2 Smp_005080.1 0.94 1.06e-07 1.13e-05
Smp_014400.1 Smp_176230.2 0.91 1.44e-06 6.93e-05
Smp_176230.2 Smp_015190.1 0.91 1.39e-06 6.75e-05
Smp_176230.2 Smp_017080.1 0.94 1.47e-07 1.41e-05
Smp_176230.2 Smp_021460.1 0.95 2.94e-08 4.71e-06
Smp_176230.2 Smp_021870.1 0.91 1.58e-06 7.37e-05
Smp_176230.2 Smp_032480.1 0.91 1.27e-06 6.33e-05
Smp_176230.2 Smp_033930.1 0.90 2.61e-06 1.00e-04
Smp_176230.2 Smp_034980.1 0.92 6.11e-07 3.78e-05
Smp_176230.2 Smp_035020.1 0.95 5.63e-08 7.32e-06
Smp_176230.2 Smp_045950.1 0.92 5.78e-07 3.63e-05
Smp_048160.1 Smp_176230.2 0.97 1.62e-09 6.96e-07
Smp_059210.7 Smp_176230.2 0.90 3.08e-06 1.00e-04
Smp_060900.1 Smp_176230.2 0.91 1.31e-06 6.47e-05
Smp_078550.1 Smp_176230.2 0.94 6.30e-08 7.90e-06
Smp_079280.1 Smp_176230.2 0.95 4.17e-08 5.97e-06
Smp_176230.2 Smp_084210.1 0.93 3.76e-07 2.69e-05
Smp_176230.2 Smp_093740.2 0.91 1.87e-06 8.32e-05
Smp_105910.1 Smp_176230.2 0.90 3.58e-06 1.00e-04
Smp_176230.2 Smp_129330.1 0.91 2.35e-06 9.75e-05
Smp_136390.1 Smp_176230.2 0.91 1.97e-06 8.62e-05
Smp_138890.1 Smp_176230.2 0.90 4.28e-06 1.00e-04
Smp_176230.2 Smp_142260.1 0.92 6.19e-07 3.81e-05
Smp_142460.1 Smp_176230.2 0.92 6.65e-07 4.01e-05
Smp_157750.1 Smp_176230.2 0.95 1.46e-08 2.94e-06
Smp_158310.1 Smp_176230.2 0.96 4.68e-09 1.38e-06
Smp_176230.2 Smp_159150.2 0.93 3.33e-07 2.47e-05
Smp_159350.1 Smp_176230.2 0.98 1.81e-11 3.97e-08
Smp_161230.1 Smp_176230.2 0.98 7.90e-11 1.00e-07
Smp_164270.1 Smp_176230.2 0.96 5.94e-09 1.62e-06
Smp_171610.1 Smp_176230.2 0.92 9.12e-07 5.00e-05
Smp_176230.2 Smp_179670.1 0.93 2.70e-07 2.14e-05
Smp_176230.2 Smp_196000.1 0.91 1.70e-06 7.78e-05
Smp_196680.1 Smp_176230.2 0.90 4.32e-06 1.00e-04
Smp_198650.1 Smp_176230.2 0.92 1.08e-06 5.63e-05
Smp_176230.2 Smp_201230.1 0.94 1.36e-07 1.33e-05
Smp_205030.1 Smp_176230.2 0.95 4.95e-08 6.70e-06