Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_175970.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00554-IBu 0 -0.37 -11.45 -11.45 -2.78
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04769-IBu 0 1.36 2.94 5.73 3.10
SmLINC05632-IBu 0 4.56 6.06 7.28 6.53
SmLINC05870-IBu 0 0.25 4.65 5.77 4.71
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
Smp_175970.1 0 0.87 3.16 5.38 5.08

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_175970.1 SmLINC00554-IBu -0.86 2.99e-05 5.00e-04
Smp_175970.1 SmLINC04475-IBu 0.82 1.00e-04 1.90e-03
Smp_175970.1 SmLINC04769-IBu 0.80 2.00e-04 3.10e-03
Smp_175970.1 SmLINC05632-IBu 0.89 7.68e-06 2.00e-04
Smp_175970.1 SmLINC05870-IBu 0.88 1.31e-05 3.00e-04
Smp_175970.1 SmLINC06449-IBu 0.82 1.00e-04 1.70e-03