Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_175560.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_175560.1 0 1.88 2.67 7.60 12.31

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_175560.1 SmLINC02376-IBu 0.82 1.00e-04 1.80e-03
Smp_175560.1 SmLINC04235-IBu 0.87 2.44e-05 5.00e-04
Smp_175560.1 SmLINC04627-IBu 0.85 4.43e-05 7.00e-04
Smp_175560.1 SmLINC06239-IBu 0.92 6.40e-07 3.74e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC03370-IBu 0 4.85 4.34 5.70 10.09
SmLINC04669-IBu 0 0.05 0.36 0.20 6.04
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
SmLINC06797-IBu 0 0.00 0.00 7.22 9.62
Smp_000270.1 0 -3.32 -1.95 -0.32 6.22
Smp_000280.1 0 0.28 -3.85 1.78 7.49
Smp_000390.1 0 1.88 0.00 5.14 11.86
Smp_000400.1 0 0.00 0.00 3.32 8.57
Smp_000410.1 0 0.05 -0.39 7.44 13.38
Smp_000420.1 0 0.46 -1.29 3.81 10.40
Smp_000430.1 0 2.49 3.10 2.37 9.46
Smp_013540.1 0 0.90 0.25 0.92 6.94
Smp_014610.1 0 2.45 0.75 3.16 9.31
Smp_020540.1 0 -4.72 0.81 -4.72 4.67
Smp_033250.1 0 1.88 1.47 7.41 14.66
Smp_041880.1 0 4.35 0.78 4.43 8.11
Smp_050270.1 0 0.23 -0.62 3.06 9.37
Smp_050750.1 0 0.03 1.31 3.80 9.53
Smp_054010.1 0 0.77 2.59 2.00 4.82
Smp_055260.1 0 -1.90 -1.11 0.06 5.74
Smp_056700.1 0 -0.74 -1.75 0.30 4.19
Smp_058160.1 0 6.89 3.04 6.00 10.33
Smp_070360.1 0 -5.70 -3.47 -0.68 2.98
Smp_076320.1 0 -0.05 1.14 4.78 9.81
Smp_077890.1 0 -1.12 -4.35 -0.67 5.48
Smp_077900.1 0 -0.17 -0.11 3.03 6.89
Smp_077920.1 0 4.92 0.00 5.39 11.83
Smp_095350.1 0 0.76 -2.26 1.00 7.32
Smp_095980.1 0 2.98 -3.66 0.39 7.55
Smp_102020.1 0 -0.28 -4.43 0.53 6.11
Smp_112450.1 0 -3.65 -3.65 -0.74 5.88
Smp_121070.1 0 -4.74 0.09 3.27 7.22
Smp_122280.1 0 0.00 0.00 4.72 8.48
Smp_128160.1 0 0.17 1.21 1.97 4.65
Smp_130970.1 0 4.67 2.67 4.97 10.18
Smp_131110.2 0 0.00 2.23 5.86 12.58
Smp_131110.5 0 -4.13 -2.00 1.07 7.44
Smp_137360.1 0 0.00 2.23 6.21 9.69
Smp_138360.1 0 -0.10 -4.27 4.84 10.60
Smp_138570.1 0 -1.57 -6.45 1.13 7.79
Smp_144440.1 0 7.66 6.96 9.39 14.48
Smp_146480.1 0 0.00 0.00 4.08 8.10
Smp_151160.1 0 1.51 0.84 -0.56 5.60
Smp_153070.1 0 -1.48 -3.15 4.90 8.45
Smp_155310.1 0 0.00 0.00 6.53 13.34
Smp_155310.2 0 0.00 0.00 4.10 11.17
Smp_165360.1 0 1.99 1.06 3.05 8.40
Smp_172010.1 0 1.31 -0.84 1.05 5.07
Smp_175560.1 0 1.88 2.67 7.60 12.31
Smp_179170.1 0 1.52 0.09 6.08 8.60
Smp_187030.1 0 -1.05 0.53 2.40 4.29
Smp_191910.1 0 -4.11 -4.11 6.38 13.11
Smp_194840.1 0 1.29 1.90 5.62 8.30
Smp_199580.1 0 0.00 3.75 4.57 6.47
Smp_201330.1 0 1.13 0.91 1.95 4.84

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_175560.1 SmLINC03370-IBu 0.98 3.00e-12 1.30e-08
Smp_175560.1 SmLINC04669-IBu 0.97 1.98e-10 1.80e-07
Smp_175560.1 SmLINC06239-IBu 0.92 6.40e-07 3.90e-05
Smp_175560.1 SmLINC06797-IBu 0.91 1.91e-06 8.44e-05
Smp_175560.1 Smp_000270.1 0.93 4.04e-07 2.83e-05
Smp_175560.1 Smp_000280.1 0.98 1.00e-11 2.75e-08
Smp_000390.1 Smp_175560.1 0.97 2.48e-10 2.08e-07
Smp_175560.1 Smp_000400.1 0.95 2.93e-08 4.70e-06
Smp_175560.1 Smp_000410.1 0.98 5.95e-12 2.00e-08
Smp_175560.1 Smp_000420.1 0.99 3.31e-14 8.24e-10
Smp_000430.1 Smp_175560.1 0.98 3.11e-11 5.60e-08
Smp_175560.1 Smp_013540.1 0.99 1.39e-15 1.17e-10
Smp_175560.1 Smp_014610.1 0.98 6.76e-12 2.15e-08
Smp_175560.1 Smp_020540.1 0.95 4.53e-08 6.31e-06
Smp_175560.1 Smp_033250.1 0.99 4.18e-13 3.84e-09
Smp_175560.1 Smp_041880.1 0.96 6.23e-09 1.67e-06
Smp_175560.1 Smp_050270.1 0.99 1.28e-15 1.11e-10
Smp_050750.1 Smp_175560.1 0.96 3.04e-09 1.04e-06
Smp_054010.1 Smp_175560.1 0.93 2.42e-07 1.99e-05
Smp_175560.1 Smp_055260.1 0.91 1.72e-06 7.85e-05
Smp_175560.1 Smp_056700.1 0.98 5.35e-11 7.85e-08
Smp_175560.1 Smp_058160.1 0.97 2.26e-09 8.62e-07
Smp_175560.1 Smp_070360.1 0.92 7.69e-07 4.43e-05
Smp_175560.1 Smp_076320.1 0.95 1.75e-08 3.33e-06
Smp_175560.1 Smp_077890.1 0.93 3.52e-07 2.57e-05
Smp_175560.1 Smp_077900.1 0.99 1.27e-15 1.10e-10
Smp_175560.1 Smp_077920.1 0.99 1.67e-14 5.41e-10
Smp_175560.1 Smp_095350.1 0.95 1.78e-08 3.36e-06
Smp_175560.1 Smp_095980.1 0.96 8.02e-09 1.97e-06
Smp_102020.1 Smp_175560.1 0.93 4.44e-07 3.02e-05
Smp_175560.1 Smp_112450.1 0.96 8.58e-09 2.06e-06
Smp_175560.1 Smp_121070.1 0.97 2.21e-09 8.48e-07
Smp_175560.1 Smp_122280.1 0.94 8.34e-08 9.56e-06
Smp_175560.1 Smp_128160.1 0.92 6.56e-07 3.97e-05
Smp_175560.1 Smp_130970.1 0.94 7.15e-08 8.61e-06
Smp_175560.1 Smp_131110.2 0.98 5.41e-11 7.91e-08
Smp_131110.5 Smp_175560.1 0.96 9.34e-09 2.18e-06
Smp_175560.1 Smp_137360.1 0.99 1.32e-12 7.85e-09
Smp_175560.1 Smp_138360.1 0.90 3.82e-06 1.00e-04
Smp_175560.1 Smp_138570.1 0.99 1.08e-13 1.69e-09
Smp_175560.1 Smp_144440.1 0.99 9.09e-14 1.54e-09
Smp_146480.1 Smp_175560.1 0.99 8.60e-14 1.49e-09
Smp_175560.1 Smp_151160.1 0.98 1.36e-10 1.41e-07
Smp_175560.1 Smp_153070.1 0.90 3.26e-06 1.00e-04
Smp_175560.1 Smp_155310.1 0.99 5.53e-14 1.14e-09
Smp_175560.1 Smp_155310.2 0.96 2.81e-09 9.92e-07
Smp_175560.1 Smp_165360.1 0.99 2.07e-15 1.47e-10
Smp_175560.1 Smp_172010.1 0.98 1.47e-11 3.49e-08
Smp_175560.1 Smp_179170.1 0.92 8.19e-07 4.63e-05
Smp_175560.1 Smp_187030.1 0.91 1.86e-06 8.26e-05
Smp_175560.1 Smp_191910.1 0.99 1.30e-15 1.12e-10
Smp_175560.1 Smp_194840.1 0.90 3.08e-06 1.00e-04
Smp_199580.1 Smp_175560.1 0.93 4.83e-07 3.21e-05
Smp_175560.1 Smp_201330.1 0.92 6.58e-07 3.98e-05