Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_175290.1 Data

Correlation between Smp_175290.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_175290.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC04947-IBu 0 -5.01 1.51 -1.96 -5.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_175290.1 0 2.94 5.17 0.92 0.51

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_175290.1 SmLINC00372-IBu 0.97 5.18e-10 3.08e-07
Smp_175290.1 SmLINC01316-IBu 0.86 3.19e-05 6.00e-04
Smp_175290.1 SmLINC04430-IBu 0.91 1.37e-06 6.44e-05
Smp_175290.1 SmLINC04947-IBu 0.86 3.41e-05 6.00e-04
Smp_175290.1 SmLINC05559-IBu 0.94 1.83e-07 1.56e-05
Smp_175290.1 SmLINC06700-IBu 0.88 1.19e-05 3.00e-04
Smp_175290.1 SmLINC06836-IBu 0.95 2.23e-08 3.68e-06

Correlation between Smp_175290.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_010140.2 0 7.72 10.83 -3.68 -3.68
Smp_021340.3 0 9.76 11.05 9.34 9.26
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_036270.3 0 1.18 2.21 -10.17 -10.17
Smp_062070.1 0 9.47 10.97 6.18 8.79
Smp_084940.2 0 10.34 11.98 9.66 9.92
Smp_098370.1 0 9.63 11.25 6.43 9.48
Smp_103540.1 0 11.43 12.63 8.84 9.65
Smp_138080.1 0 4.97 10.75 -3.79 3.75
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
Smp_159150.1 0 12.28 13.98 12.38 11.81
Smp_175290.1 0 2.94 5.17 0.92 0.51

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_010140.2 Smp_175290.1 0.90 2.57e-06 1.00e-04
Smp_175290.1 Smp_021340.3 0.90 4.63e-06 1.00e-04
Smp_175290.1 Smp_032120.1 0.95 1.59e-08 3.12e-06
Smp_175290.1 Smp_036270.3 0.90 4.07e-06 1.00e-04
Smp_175290.1 Smp_062070.1 0.96 2.84e-09 9.99e-07
Smp_175290.1 Smp_084940.2 0.95 3.42e-08 5.22e-06
Smp_175290.1 Smp_098370.1 0.94 1.78e-07 1.61e-05
Smp_103540.1 Smp_175290.1 0.95 4.18e-08 5.99e-06
Smp_138080.1 Smp_175290.1 0.93 4.31e-07 2.96e-05
Smp_175290.1 Smp_159070.3 0.96 4.12e-09 1.27e-06
Smp_175290.1 Smp_159150.1 0.95 5.93e-08 7.58e-06