Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_174530.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00007-IBu 0 2.71 2.19 5.12 7.33
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02776-IBu 0 4.33 2.79 6.19 9.25
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04237-IBu 0 0.00 0.00 3.71 7.42
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC04896-IBu 0 -1.86 -3.75 1.58 4.07
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_174530.1 0 1.07 -3.50 -0.45 5.30

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_174530.1 SmLINC00007-IBu 0.87 2.36e-05 4.00e-04
Smp_174530.1 SmLINC01520-IBu 0.91 1.82e-06 7.88e-05
Smp_174530.1 SmLINC02029-IBu 0.93 2.75e-07 2.07e-05
Smp_174530.1 SmLINC02539-IBu 0.86 3.11e-05 6.00e-04
Smp_174530.1 SmLINC02540-IBu 0.81 1.00e-04 2.10e-03
Smp_174530.1 SmLINC02577-IBu 0.89 6.76e-06 2.00e-04
Smp_174530.1 SmLINC02776-IBu 0.86 2.86e-05 5.00e-04
Smp_174530.1 SmLINC02783-IBu 0.91 2.15e-06 8.84e-05
Smp_174530.1 SmLINC02786-IBu 0.98 2.92e-12 1.16e-08
Smp_174530.1 SmLINC03658-IBu 0.89 6.38e-06 1.00e-04
Smp_174530.1 SmLINC04235-IBu 0.88 1.17e-05 2.00e-04
Smp_174530.1 SmLINC04237-IBu 0.88 1.00e-05 2.00e-04
Smp_174530.1 SmLINC04627-IBu 0.86 2.58e-05 5.00e-04
Smp_174530.1 SmLINC04896-IBu 0.90 3.82e-06 1.00e-04
Smp_174530.1 SmLINC05404-IBu 0.93 4.91e-07 3.10e-05
Smp_174530.1 SmLINC05684-IBu 0.94 1.15e-07 1.13e-05
Smp_174530.1 SmLINC06239-IBu 0.85 5.47e-05 9.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_089270.1 0 3.49 0.00 4.50 10.21
Smp_105450.1 0 4.55 9.19 10.26 14.94
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_126340.1 0 0.00 2.97 7.05 12.21
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_137460.1 0 4.80 0.00 4.12 10.48
Smp_137700.1 0 2.72 4.76 8.79 13.14
Smp_138360.1 0 -0.10 -4.27 4.84 10.60
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_152150.1 0 0.00 0.00 8.69 15.96
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_167830.1 0 0.00 0.00 6.17 12.87
Smp_170840.1 0 3.57 0.00 5.93 11.86
Smp_174530.1 0 1.07 -3.50 -0.45 5.30
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_194910.1 0 0.37 1.92 8.43 11.13

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_174530.1 Smp_037720.1 0.90 2.80e-06 1.00e-04
Smp_041540.1 Smp_174530.1 0.99 1.48e-12 8.46e-09
Smp_174530.1 Smp_070540.1 0.98 1.64e-10 1.60e-07
Smp_089270.1 Smp_174530.1 0.92 1.00e-06 5.34e-05
Smp_174530.1 Smp_105450.1 0.97 9.26e-10 4.85e-07
Smp_174530.1 Smp_105450.2 0.96 1.02e-08 2.31e-06
Smp_126340.1 Smp_174530.1 0.97 2.00e-10 1.81e-07
Smp_174530.1 Smp_136730.1 0.94 9.89e-08 1.07e-05
Smp_137460.1 Smp_174530.1 0.95 1.51e-08 3.01e-06
Smp_174530.1 Smp_137700.1 0.91 1.74e-06 7.90e-05
Smp_174530.1 Smp_138360.1 0.92 6.05e-07 3.75e-05
Smp_139160.1 Smp_174530.1 0.92 5.76e-07 3.62e-05
Smp_174530.1 Smp_139240.1 0.90 3.15e-06 1.00e-04
Smp_152150.1 Smp_174530.1 0.96 4.57e-09 1.36e-06
Smp_164400.1 Smp_174530.1 0.97 1.72e-10 1.64e-07
Smp_174530.1 Smp_167830.1 0.92 1.10e-06 5.71e-05
Smp_170840.1 Smp_174530.1 0.93 3.01e-07 2.31e-05
Smp_181070.1 Smp_174530.1 0.93 2.27e-07 1.90e-05
Smp_174530.1 Smp_187140.1 0.90 3.60e-06 1.00e-04
Smp_174530.1 Smp_194910.1 0.92 1.15e-06 5.89e-05