Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_174520.1 Data


Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_067980.1 0 -0.94 -11.67 -4.00 -4.18
Smp_083180.1 0 -1.30 -10.31 -10.31 -10.31
Smp_168080.2 0 -1.01 -12.06 -12.06 -12.06
Smp_174520.1 0 -1.49 -5.54 -1.86 -3.92
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76
Smp_195070.1 0 -1.13 -9.73 -18.26 -16.31

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_174520.1 Smp_067980.1 0.91 1.49e-06 7.09e-05
Smp_174520.1 Smp_083180.1 0.91 1.42e-06 6.86e-05
Smp_174520.1 Smp_168080.2 0.91 1.89e-06 8.38e-05
Smp_174520.1 Smp_188900.1 0.90 4.52e-06 1.00e-04
Smp_174520.1 Smp_195070.1 0.91 2.05e-06 8.85e-05