Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_174290.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00769-IBu 0 0.00 0.00 11.31 9.29
SmLINC04054-IBu 0 0.17 -0.60 5.38 2.72
SmLINC04345-IBu 0 -0.21 -0.00 6.97 4.53
SmLINC04637-IBu 0 5.61 0.00 9.87 8.40
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC04747-IBu 0 6.14 4.80 9.94 4.77
SmLINC04953-IBu 0 4.15 3.52 7.42 3.10
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06537-IBu 0 -3.92 -3.92 4.71 2.74
Smp_174290.1 0 0.43 -5.17 1.44 -0.05

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_174290.1 SmLINC00769-IBu 0.84 6.21e-05 9.00e-04
Smp_174290.1 SmLINC04054-IBu 0.83 1.00e-04 1.60e-03
Smp_174290.1 SmLINC04345-IBu 0.86 2.65e-05 5.00e-04
Smp_174290.1 SmLINC04637-IBu 0.83 9.47e-05 1.30e-03
Smp_174290.1 SmLINC04663-IBu 0.83 1.00e-04 1.60e-03
Smp_174290.1 SmLINC04747-IBu 0.85 4.98e-05 8.00e-04
Smp_174290.1 SmLINC04953-IBu 0.83 1.00e-04 1.40e-03
Smp_174290.1 SmLINC06444-IBu 0.81 2.00e-04 2.70e-03
Smp_174290.1 SmLINC06537-IBu 0.86 3.24e-05 6.00e-04