Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_173950.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
Smp_173950.1 0 -0.87 -0.80 -7.89 -8.12

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_173950.1 SmLINC00004-IBu -0.81 1.00e-04 2.20e-03
Smp_173950.1 SmLINC00369-IBu -0.82 1.00e-04 1.60e-03
Smp_173950.1 SmLINC01431-IBu -0.84 7.18e-05 1.10e-03
Smp_173950.1 SmLINC02084-IBu -0.81 1.00e-04 2.20e-03
Smp_173950.1 SmLINC04421-IBu -0.84 8.48e-05 1.20e-03
Smp_173950.1 SmLINC04423-IBu -0.82 1.00e-04 2.10e-03
Smp_173950.1 SmLINC04478-IBu -0.80 3.00e-04 3.10e-03
Smp_173950.1 SmLINC05274-IBu 0.90 3.58e-06 1.00e-04
Smp_173950.1 SmLINC05604-IBu -0.80 2.00e-04 2.70e-03
Smp_173950.1 SmLINC06490-IBu 0.80 2.00e-04 3.00e-03