Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_173110.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC01433-IBu 0 5.33 4.84 12.27 11.18
SmLINC01822-IBu 0 0.00 0.00 7.51 5.59
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC04769-IBu 0 1.36 2.94 5.73 3.10
SmLINC05009-IBu 0 0.41 -0.30 3.78 1.52
SmLINC05632-IBu 0 4.56 6.06 7.28 6.53
SmLINC05990-IBu 0 9.67 10.42 11.79 11.49
SmLINC06007-IBu 0 -3.84 -0.77 4.39 2.11
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
Smp_173110.1 0 4.09 5.06 6.58 5.81

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_173110.1 SmLINC01066-IBu 0.81 2.00e-04 2.70e-03
Smp_173110.1 SmLINC01433-IBu 0.81 2.00e-04 2.70e-03
Smp_173110.1 SmLINC01822-IBu 0.80 3.00e-04 3.30e-03
Smp_173110.1 SmLINC03693-IBu 0.80 3.00e-04 3.30e-03
Smp_173110.1 SmLINC04769-IBu 0.80 2.00e-04 3.00e-03
Smp_173110.1 SmLINC05009-IBu 0.83 1.00e-04 1.40e-03
Smp_173110.1 SmLINC05632-IBu 0.86 2.71e-05 5.00e-04
Smp_173110.1 SmLINC05990-IBu 0.81 2.00e-04 2.70e-03
Smp_173110.1 SmLINC06007-IBu 0.80 2.00e-04 3.10e-03
Smp_173110.1 SmLINC06221-IBu 0.83 1.00e-04 1.50e-03