Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_172630.1 Data

Correlation between Smp_172630.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_172630.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00171-IBu 0 -0.59 -5.27 3.90 3.47
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00484-IBu 0 -0.02 2.64 6.82 5.24
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC00769-IBu 0 0.00 0.00 11.31 9.29
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01171-IBu 0 4.66 1.75 6.39 6.26
SmLINC01231-IBu 0 0.31 -3.75 7.29 6.55
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01433-IBu 0 5.33 4.84 12.27 11.18
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC01822-IBu 0 0.00 0.00 7.51 5.59
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02581-IBu 0 11.96 10.32 13.16 12.10
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC04054-IBu 0 0.17 -0.60 5.38 2.72
SmLINC04345-IBu 0 -0.21 -0.00 6.97 4.53
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04637-IBu 0 5.61 0.00 9.87 8.40
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC04747-IBu 0 6.14 4.80 9.94 4.77
SmLINC04769-IBu 0 1.36 2.94 5.73 3.10
SmLINC05009-IBu 0 0.41 -0.30 3.78 1.52
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05171-IBu 0 -0.19 -0.55 5.90 3.90
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC06007-IBu 0 -3.84 -0.77 4.39 2.11
SmLINC06010-IBu 0 1.91 2.45 5.62 4.62
SmLINC06205-IBu 0 0.00 7.73 9.47 9.16
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06418-IBu 0 -2.45 2.43 6.45 5.75
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06536-IBu 0 -3.65 0.03 5.24 4.25
SmLINC06538-IBu 0 0.43 1.18 7.23 4.57
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_172630.1 0 1.02 -2.39 3.98 3.22

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_172630.1 SmLINC00171-IBu 0.89 5.92e-06 1.00e-04
Smp_172630.1 SmLINC00369-IBu 0.81 2.00e-04 2.40e-03
Smp_172630.1 SmLINC00477-IBu 0.94 1.15e-07 1.13e-05
Smp_172630.1 SmLINC00484-IBu 0.89 5.67e-06 1.00e-04
Smp_172630.1 SmLINC00548-IBu 0.90 3.20e-06 1.00e-04
Smp_172630.1 SmLINC00633-IBu 0.88 1.19e-05 3.00e-04
Smp_172630.1 SmLINC00769-IBu 0.90 3.29e-06 1.00e-04
Smp_172630.1 SmLINC01066-IBu 0.91 1.67e-06 7.39e-05
Smp_172630.1 SmLINC01139-IBu 0.94 8.32e-08 9.04e-06
Smp_172630.1 SmLINC01171-IBu 0.80 2.00e-04 2.80e-03
Smp_172630.1 SmLINC01231-IBu 0.86 3.70e-05 6.00e-04
Smp_172630.1 SmLINC01431-IBu 0.82 1.00e-04 1.70e-03
Smp_172630.1 SmLINC01433-IBu 0.91 1.98e-06 8.35e-05
Smp_172630.1 SmLINC01435-IBu 0.86 3.10e-05 6.00e-04
Smp_172630.1 SmLINC01538-IBu 0.93 2.01e-07 1.66e-05
Smp_172630.1 SmLINC01569-IBu 0.82 1.00e-04 2.00e-03
Smp_172630.1 SmLINC01733-IBu 0.89 6.06e-06 1.00e-04
Smp_172630.1 SmLINC01746-IBu 0.91 2.29e-06 9.27e-05
Smp_172630.1 SmLINC01822-IBu 0.92 6.36e-07 3.72e-05
Smp_172630.1 SmLINC02546-IBu 0.84 8.45e-05 1.20e-03
Smp_172630.1 SmLINC02581-IBu 0.86 2.53e-05 5.00e-04
Smp_172630.1 SmLINC03309-IBu 0.94 9.94e-08 1.02e-05
Smp_172630.1 SmLINC03542-IBu 0.91 2.15e-06 8.84e-05
Smp_172630.1 SmLINC03693-IBu 0.91 1.50e-06 6.87e-05
Smp_172630.1 SmLINC04054-IBu 0.93 3.16e-07 2.28e-05
Smp_172630.1 SmLINC04345-IBu 0.89 6.22e-06 1.00e-04
Smp_172630.1 SmLINC04432-IBu 0.87 1.67e-05 3.00e-04
Smp_172630.1 SmLINC04475-IBu 0.87 2.31e-05 4.00e-04
Smp_172630.1 SmLINC04521-IBu 0.85 4.25e-05 7.00e-04
Smp_172630.1 SmLINC04637-IBu 0.87 1.54e-05 3.00e-04
Smp_172630.1 SmLINC04663-IBu 0.94 1.61e-07 1.43e-05
Smp_172630.1 SmLINC04684-IBu 0.88 1.07e-05 2.00e-04
Smp_172630.1 SmLINC04747-IBu 0.91 2.50e-06 9.85e-05
Smp_172630.1 SmLINC04769-IBu 0.90 4.48e-06 1.00e-04
Smp_172630.1 SmLINC05009-IBu 0.90 2.95e-06 1.00e-04
Smp_172630.1 SmLINC05147-IBu 0.91 1.79e-06 7.76e-05
Smp_172630.1 SmLINC05171-IBu 0.95 4.36e-08 5.81e-06
Smp_172630.1 SmLINC05258-IBu 0.90 3.85e-06 1.00e-04
Smp_172630.1 SmLINC06007-IBu 0.89 5.60e-06 1.00e-04
Smp_172630.1 SmLINC06010-IBu 0.88 1.40e-05 3.00e-04
Smp_172630.1 SmLINC06205-IBu 0.80 3.00e-04 3.20e-03
Smp_172630.1 SmLINC06221-IBu 0.91 1.38e-06 6.47e-05
Smp_172630.1 SmLINC06418-IBu 0.88 1.47e-05 3.00e-04
Smp_172630.1 SmLINC06444-IBu 0.88 1.11e-05 2.00e-04
Smp_172630.1 SmLINC06449-IBu 0.92 7.39e-07 4.14e-05
Smp_172630.1 SmLINC06536-IBu 0.95 2.31e-08 3.76e-06
Smp_172630.1 SmLINC06538-IBu 0.87 1.89e-05 4.00e-04
Smp_172630.1 SmLINC06543-IBu 0.89 6.42e-06 1.00e-04

Correlation between Smp_172630.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_017610.1 0 -3.10 2.10 11.36 6.75
Smp_034980.2 0 8.75 0.00 11.30 11.03
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_056360.3 0 -9.92 -10.13 2.08 1.89
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_068270.1 0 0.21 0.34 12.30 11.22
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_084270.1 0 3.51 4.06 10.11 8.38
Smp_105730.1 0 0.00 0.00 11.80 9.62
Smp_118560.1 0 6.31 8.12 10.54 9.19
Smp_123200.1 0 0.00 0.00 12.38 11.42
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_128510.1 0 3.20 1.49 10.55 5.33
Smp_131840.1 0 1.87 2.16 10.14 8.34
Smp_134960.1 0 -1.83 4.14 10.34 9.04
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_154180.1 0 5.56 0.00 15.37 13.48
Smp_154190.1 0 -1.93 -1.93 10.13 8.88
Smp_159070.2 0 -0.62 -11.03 1.85 1.97
Smp_160360.1 0 0.49 1.23 10.10 7.29
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_172520.1 0 3.57 6.60 11.28 9.54
Smp_172630.1 0 1.02 -2.39 3.98 3.22
Smp_175020.1 0 5.88 8.81 11.73 9.58
Smp_194960.1 0 0.00 0.00 17.20 15.87
Smp_194970.1 0 6.28 10.15 15.43 13.82
Smp_194980.1 0 2.89 8.17 12.59 10.55
Smp_197400.1 0 0.00 0.00 10.12 7.45
Smp_200750.1 0 1.72 7.25 10.11 8.83
Smp_205270.1 0 0.71 -0.40 10.02 9.83

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_017610.1 Smp_172630.1 0.93 2.65e-07 2.11e-05
Smp_034980.2 Smp_172630.1 0.90 2.75e-06 1.00e-04
Smp_045200.1 Smp_172630.1 0.92 5.76e-07 3.62e-05
Smp_056360.3 Smp_172630.1 0.90 3.17e-06 1.00e-04
Smp_058660.1 Smp_172630.1 0.90 3.80e-06 1.00e-04
Smp_068270.1 Smp_172630.1 0.93 1.94e-07 1.70e-05
Smp_082580.1 Smp_172630.1 0.92 7.44e-07 4.33e-05
Smp_084270.1 Smp_172630.1 0.95 3.68e-08 5.49e-06
Smp_105730.1 Smp_172630.1 0.94 1.89e-07 1.68e-05
Smp_118560.1 Smp_172630.1 0.90 3.34e-06 1.00e-04
Smp_123200.1 Smp_172630.1 0.94 1.04e-07 1.11e-05
Smp_125210.1 Smp_172630.1 0.94 1.09e-07 1.14e-05
Smp_128510.1 Smp_172630.1 0.94 1.60e-07 1.49e-05
Smp_131840.1 Smp_172630.1 0.91 1.45e-06 6.94e-05
Smp_134960.1 Smp_172630.1 0.95 3.34e-08 5.14e-06
Smp_137320.1 Smp_172630.1 0.92 1.17e-06 5.96e-05
Smp_154180.1 Smp_172630.1 0.90 2.78e-06 1.00e-04
Smp_154190.1 Smp_172630.1 0.93 3.41e-07 2.52e-05
Smp_159070.2 Smp_172630.1 0.90 3.82e-06 1.00e-04
Smp_160360.1 Smp_172630.1 0.93 4.47e-07 3.04e-05
Smp_164550.1 Smp_172630.1 0.94 9.59e-08 1.05e-05
Smp_170280.1 Smp_172630.1 0.93 2.99e-07 2.30e-05
Smp_172480.1 Smp_172630.1 0.91 1.87e-06 8.32e-05
Smp_172520.1 Smp_172630.1 0.90 4.47e-06 1.00e-04
Smp_175020.1 Smp_172630.1 0.92 6.15e-07 3.79e-05
Smp_194960.1 Smp_172630.1 0.94 8.99e-08 1.00e-05
Smp_194970.1 Smp_172630.1 0.93 3.56e-07 2.60e-05
Smp_194980.1 Smp_172630.1 0.91 1.91e-06 8.43e-05
Smp_197400.1 Smp_172630.1 0.93 4.47e-07 3.04e-05
Smp_200750.1 Smp_172630.1 0.94 1.25e-07 1.26e-05
Smp_205270.1 Smp_172630.1 0.91 1.47e-06 7.01e-05