Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_172610.1 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
Smp_172610.1 0 0.44 1.78 3.40 5.16

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_172610.1 SmLINC04271-IBu -0.66 6.30e-03 2.48e-02
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00007-IBu 0 2.71 2.19 5.12 7.33
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02545-IBu 0 3.54 1.98 7.53 8.45
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC04896-IBu 0 -1.86 -3.75 1.58 4.07
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
SmLINC06415-IBu 0 0.00 5.09 7.86 8.72
Smp_172610.1 0 0.44 1.78 3.40 5.16

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_172610.1 SmLINC00001-IBu 0.90 4.74e-06 1.00e-04
Smp_172610.1 SmLINC00004-IBu 0.93 3.02e-07 2.21e-05
Smp_172610.1 SmLINC00007-IBu 0.82 1.00e-04 2.00e-03
Smp_172610.1 SmLINC00525-IBu 0.84 7.59e-05 1.10e-03
Smp_172610.1 SmLINC01084-IBu 0.81 1.00e-04 2.20e-03
Smp_172610.1 SmLINC01520-IBu 0.90 3.49e-06 1.00e-04
Smp_172610.1 SmLINC02029-IBu 0.91 1.62e-06 7.24e-05
Smp_172610.1 SmLINC02376-IBu 0.89 5.00e-06 1.00e-04
Smp_172610.1 SmLINC02539-IBu 0.89 5.94e-06 1.00e-04
Smp_172610.1 SmLINC02540-IBu 0.81 2.00e-04 2.30e-03
Smp_172610.1 SmLINC02545-IBu 0.89 8.71e-06 2.00e-04
Smp_172610.1 SmLINC02577-IBu 0.90 4.35e-06 1.00e-04
Smp_172610.1 SmLINC02783-IBu 0.87 2.30e-05 4.00e-04
Smp_172610.1 SmLINC02786-IBu 0.86 2.65e-05 5.00e-04
Smp_172610.1 SmLINC03326-IBu 0.83 9.20e-05 1.30e-03
Smp_172610.1 SmLINC03658-IBu 0.87 2.03e-05 4.00e-04
Smp_172610.1 SmLINC03927-IBu 0.82 1.00e-04 2.00e-03
Smp_172610.1 SmLINC04235-IBu 0.95 2.65e-08 4.13e-06
Smp_172610.1 SmLINC04421-IBu 0.88 9.27e-06 2.00e-04
Smp_172610.1 SmLINC04423-IBu 0.90 4.70e-06 1.00e-04
Smp_172610.1 SmLINC04627-IBu 0.80 2.00e-04 2.80e-03
Smp_172610.1 SmLINC04896-IBu 0.92 5.33e-07 3.29e-05
Smp_172610.1 SmLINC05289-IBu 0.82 1.00e-04 2.10e-03
Smp_172610.1 SmLINC05404-IBu 0.95 2.18e-08 3.62e-06
Smp_172610.1 SmLINC05604-IBu 0.93 3.60e-07 2.50e-05
Smp_172610.1 SmLINC05684-IBu 0.90 2.53e-06 9.95e-05
Smp_172610.1 SmLINC06024-IBu 0.85 4.60e-05 8.00e-04
Smp_172610.1 SmLINC06239-IBu 0.90 2.92e-06 1.00e-04
Smp_172610.1 SmLINC06415-IBu 0.87 1.59e-05 3.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_004780.3 0 8.47 8.56 12.10 13.78
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_172610.1 0 0.44 1.78 3.40 5.16
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_203030.1 0 2.55 0.41 8.36 10.39

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_172610.1 Smp_004780.3 0.92 1.12e-06 5.78e-05
Smp_172610.1 Smp_016490.2 0.92 8.34e-07 4.69e-05
Smp_172610.1 Smp_028870.1 0.90 3.21e-06 1.00e-04
Smp_172610.1 Smp_037720.1 0.92 1.14e-06 5.85e-05
Smp_172610.1 Smp_041540.1 0.90 4.00e-06 1.00e-04
Smp_172610.1 Smp_102780.1 0.91 1.37e-06 6.67e-05
Smp_172610.1 Smp_105450.2 0.90 4.14e-06 1.00e-04
Smp_172610.1 Smp_130100.1 0.94 1.39e-07 1.36e-05
Smp_172610.1 Smp_137810.1 0.92 7.77e-07 4.47e-05
Smp_172610.1 Smp_140720.1 0.96 5.99e-09 1.62e-06
Smp_172610.1 Smp_155570.1 0.91 1.81e-06 8.10e-05
Smp_172610.1 Smp_159650.1 0.91 2.34e-06 9.74e-05
Smp_172610.1 Smp_181070.1 0.91 1.39e-06 6.73e-05
Smp_172610.1 Smp_187140.1 0.90 4.65e-06 1.00e-04
Smp_172610.1 Smp_192780.1 0.92 9.09e-07 4.98e-05
Smp_172610.1 Smp_194910.1 0.90 3.23e-06 1.00e-04
Smp_172610.1 Smp_202610.1 0.90 3.31e-06 1.00e-04
Smp_172610.1 Smp_203030.1 0.94 6.69e-08 8.22e-06