Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_172510.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00266-IBu 0 2.25 3.99 6.14 6.95
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC04250-IBu 0 6.51 7.95 8.09 9.23
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_172510.2 0 9.12 10.77 11.45 12.33

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_172510.2 SmLINC00266-IBu 0.86 3.36e-05 6.00e-04
Smp_172510.2 SmLINC02255-IBu -0.85 4.09e-05 7.00e-04
Smp_172510.2 SmLINC02630-IBu -0.82 1.00e-04 1.70e-03
Smp_172510.2 SmLINC02657-IBu -0.85 5.96e-05 9.00e-04
Smp_172510.2 SmLINC04250-IBu 0.80 2.00e-04 3.00e-03
Smp_172510.2 SmLINC06128-IBu -0.80 2.00e-04 3.00e-03
Smp_172510.2 SmLINC06535-IBu -0.84 7.47e-05 1.10e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_000350.2 0 0.22 2.78 3.99 4.34
Smp_063060.1 0 4.43 5.74 6.88 7.39
Smp_126470.1 0 1.38 2.58 4.77 5.50
Smp_144920.1 0 0.61 2.49 4.01 4.87
Smp_157390.1 0 3.34 4.15 5.22 5.62
Smp_172510.2 0 9.12 10.77 11.45 12.33
Smp_180920.1 0 2.38 4.29 4.89 5.30
Smp_214020.1 0 1.35 2.40 4.26 4.68

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000350.2 Smp_172510.2 0.90 3.61e-06 1.00e-04
Smp_063060.1 Smp_172510.2 0.93 2.29e-07 1.91e-05
Smp_172510.2 Smp_126470.1 0.90 4.72e-06 1.00e-04
Smp_144920.1 Smp_172510.2 0.91 1.53e-06 7.22e-05
Smp_157390.1 Smp_172510.2 0.90 4.34e-06 1.00e-04
Smp_172510.2 Smp_180920.1 0.91 1.93e-06 8.48e-05
Smp_172510.2 Smp_214020.1 0.90 2.74e-06 1.00e-04