Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_172500.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00484-IBu 0 -0.02 2.64 6.82 5.24
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00554-IBu 0 -0.37 -11.45 -11.45 -2.78
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC04345-IBu 0 -0.21 -0.00 6.97 4.53
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC04769-IBu 0 1.36 2.94 5.73 3.10
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05632-IBu 0 4.56 6.06 7.28 6.53
SmLINC05870-IBu 0 0.25 4.65 5.77 4.71
SmLINC06010-IBu 0 1.91 2.45 5.62 4.62
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06418-IBu 0 -2.45 2.43 6.45 5.75
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_172500.1 0 -0.00 3.03 5.12 4.90

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_172500.1 SmLINC00477-IBu 0.81 1.00e-04 2.20e-03
Smp_172500.1 SmLINC00484-IBu 0.84 6.21e-05 9.00e-04
Smp_172500.1 SmLINC00548-IBu 0.82 1.00e-04 1.80e-03
Smp_172500.1 SmLINC00554-IBu -0.84 7.29e-05 1.10e-03
Smp_172500.1 SmLINC00556-IBu -0.80 2.00e-04 2.80e-03
Smp_172500.1 SmLINC01122-IBu 0.83 1.00e-04 1.40e-03
Smp_172500.1 SmLINC01139-IBu 0.81 1.00e-04 2.20e-03
Smp_172500.1 SmLINC01435-IBu 0.84 7.83e-05 1.10e-03
Smp_172500.1 SmLINC01538-IBu 0.85 5.71e-05 9.00e-04
Smp_172500.1 SmLINC01569-IBu 0.84 6.28e-05 1.00e-03
Smp_172500.1 SmLINC01733-IBu 0.85 4.17e-05 7.00e-04
Smp_172500.1 SmLINC01746-IBu 0.85 4.39e-05 7.00e-04
Smp_172500.1 SmLINC03309-IBu 0.86 3.92e-05 7.00e-04
Smp_172500.1 SmLINC03542-IBu 0.80 3.00e-04 3.20e-03
Smp_172500.1 SmLINC03693-IBu 0.82 1.00e-04 1.70e-03
Smp_172500.1 SmLINC04345-IBu 0.82 1.00e-04 1.80e-03
Smp_172500.1 SmLINC04432-IBu 0.87 2.26e-05 4.00e-04
Smp_172500.1 SmLINC04475-IBu 0.91 2.12e-06 8.76e-05
Smp_172500.1 SmLINC04521-IBu 0.81 1.00e-04 2.30e-03
Smp_172500.1 SmLINC04663-IBu 0.82 1.00e-04 1.80e-03
Smp_172500.1 SmLINC04769-IBu 0.83 1.00e-04 1.40e-03
Smp_172500.1 SmLINC05147-IBu 0.80 2.00e-04 3.00e-03
Smp_172500.1 SmLINC05632-IBu 0.85 5.44e-05 9.00e-04
Smp_172500.1 SmLINC05870-IBu 0.90 4.00e-06 1.00e-04
Smp_172500.1 SmLINC06010-IBu 0.85 5.19e-05 8.00e-04
Smp_172500.1 SmLINC06221-IBu 0.86 2.83e-05 5.00e-04
Smp_172500.1 SmLINC06418-IBu 0.80 3.00e-04 3.40e-03
Smp_172500.1 SmLINC06444-IBu 0.86 3.03e-05 5.00e-04
Smp_172500.1 SmLINC06449-IBu 0.87 1.75e-05 3.00e-04
Smp_172500.1 SmLINC06543-IBu 0.84 8.37e-05 1.20e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_051210.3 0 3.15 11.52 13.74 13.72
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_125200.1 0 0.00 7.38 10.66 9.27
Smp_129110.1 0 7.10 10.62 11.56 10.18
Smp_172500.1 0 -0.00 3.03 5.12 4.90

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_172500.1 Smp_045200.1 0.90 4.07e-06 1.00e-04
Smp_172500.1 Smp_051210.3 0.91 1.77e-06 8.00e-05
Smp_172500.1 Smp_055340.2 0.90 4.71e-06 1.00e-04
Smp_172500.1 Smp_125200.1 0.90 2.62e-06 1.00e-04
Smp_129110.1 Smp_172500.1 0.90 4.17e-06 1.00e-04