Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_172340.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00007-IBu 0 2.71 2.19 5.12 7.33
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02776-IBu 0 4.33 2.79 6.19 9.25
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04237-IBu 0 0.00 0.00 3.71 7.42
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC04896-IBu 0 -1.86 -3.75 1.58 4.07
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_172340.1 0 1.14 -3.01 0.24 3.66

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_172340.1 SmLINC00007-IBu 0.83 1.00e-04 1.50e-03
Smp_172340.1 SmLINC01520-IBu 0.89 6.51e-06 1.00e-04
Smp_172340.1 SmLINC02029-IBu 0.91 2.31e-06 9.32e-05
Smp_172340.1 SmLINC02376-IBu 0.82 1.00e-04 1.90e-03
Smp_172340.1 SmLINC02539-IBu 0.84 6.35e-05 1.00e-03
Smp_172340.1 SmLINC02540-IBu 0.80 3.00e-04 3.40e-03
Smp_172340.1 SmLINC02577-IBu 0.88 1.34e-05 3.00e-04
Smp_172340.1 SmLINC02776-IBu 0.82 1.00e-04 1.90e-03
Smp_172340.1 SmLINC02783-IBu 0.90 4.65e-06 1.00e-04
Smp_172340.1 SmLINC02786-IBu 0.94 7.90e-08 8.73e-06
Smp_172340.1 SmLINC03326-IBu 0.81 2.00e-04 2.70e-03
Smp_172340.1 SmLINC03658-IBu 0.88 1.09e-05 2.00e-04
Smp_172340.1 SmLINC04235-IBu 0.90 3.22e-06 1.00e-04
Smp_172340.1 SmLINC04237-IBu 0.86 3.15e-05 6.00e-04
Smp_172340.1 SmLINC04627-IBu 0.87 1.61e-05 3.00e-04
Smp_172340.1 SmLINC04896-IBu 0.88 1.45e-05 3.00e-04
Smp_172340.1 SmLINC05404-IBu 0.92 8.19e-07 4.45e-05
Smp_172340.1 SmLINC05684-IBu 0.93 5.06e-07 3.17e-05
Smp_172340.1 SmLINC06239-IBu 0.88 1.04e-05 2.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_004420.3 0 0.00 5.84 10.64 14.52
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_105450.1 0 4.55 9.19 10.26 14.94
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_126340.1 0 0.00 2.97 7.05 12.21
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_137460.1 0 4.80 0.00 4.12 10.48
Smp_137700.1 0 2.72 4.76 8.79 13.14
Smp_138360.1 0 -0.10 -4.27 4.84 10.60
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_152150.1 0 0.00 0.00 8.69 15.96
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_170840.1 0 3.57 0.00 5.93 11.86
Smp_172340.1 0 1.14 -3.01 0.24 3.66
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_194910.1 0 0.37 1.92 8.43 11.13

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_004420.3 Smp_172340.1 0.90 3.81e-06 1.00e-04
Smp_041540.1 Smp_172340.1 0.96 1.32e-08 2.75e-06
Smp_172340.1 Smp_070540.1 0.94 1.43e-07 1.38e-05
Smp_105450.1 Smp_172340.1 0.94 1.60e-07 1.49e-05
Smp_172340.1 Smp_105450.2 0.95 5.60e-08 7.29e-06
Smp_126340.1 Smp_172340.1 0.93 2.29e-07 1.91e-05
Smp_172340.1 Smp_130100.1 0.90 3.96e-06 1.00e-04
Smp_136730.1 Smp_172340.1 0.92 6.48e-07 3.93e-05
Smp_137460.1 Smp_172340.1 0.96 5.26e-09 1.49e-06
Smp_172340.1 Smp_137700.1 0.92 8.12e-07 4.61e-05
Smp_138360.1 Smp_172340.1 0.94 1.76e-07 1.59e-05
Smp_139160.1 Smp_172340.1 0.91 1.63e-06 7.53e-05
Smp_152150.1 Smp_172340.1 0.95 2.79e-08 4.55e-06
Smp_164400.1 Smp_172340.1 0.96 6.28e-09 1.67e-06
Smp_170840.1 Smp_172340.1 0.90 3.91e-06 1.00e-04
Smp_181070.1 Smp_172340.1 0.93 2.54e-07 2.05e-05
Smp_172340.1 Smp_194910.1 0.91 1.44e-06 6.90e-05