Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_172020.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00484-IBu 0 -0.02 2.64 6.82 5.24
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC00769-IBu 0 0.00 0.00 11.31 9.29
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01171-IBu 0 4.66 1.75 6.39 6.26
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04345-IBu 0 -0.21 -0.00 6.97 4.53
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04637-IBu 0 5.61 0.00 9.87 8.40
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC06010-IBu 0 1.91 2.45 5.62 4.62
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06418-IBu 0 -2.45 2.43 6.45 5.75
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
SmLINC06537-IBu 0 -3.92 -3.92 4.71 2.74
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_172020.1 0 0.89 0.19 3.81 4.25

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_172020.1 SmLINC00001-IBu 0.80 2.00e-04 2.80e-03
Smp_172020.1 SmLINC00004-IBu 0.85 4.91e-05 8.00e-04
Smp_172020.1 SmLINC00369-IBu 0.94 1.33e-07 1.25e-05
Smp_172020.1 SmLINC00376-IBu 0.83 1.00e-04 1.50e-03
Smp_172020.1 SmLINC00477-IBu 0.80 2.00e-04 2.80e-03
Smp_172020.1 SmLINC00484-IBu 0.80 2.00e-04 2.80e-03
Smp_172020.1 SmLINC00525-IBu 0.88 1.04e-05 2.00e-04
Smp_172020.1 SmLINC00548-IBu 0.91 2.04e-06 8.53e-05
Smp_172020.1 SmLINC00633-IBu 0.89 7.68e-06 2.00e-04
Smp_172020.1 SmLINC00769-IBu 0.82 1.00e-04 2.10e-03
Smp_172020.1 SmLINC01084-IBu 0.93 2.88e-07 2.13e-05
Smp_172020.1 SmLINC01122-IBu 0.96 9.83e-09 2.11e-06
Smp_172020.1 SmLINC01139-IBu 0.88 1.44e-05 3.00e-04
Smp_172020.1 SmLINC01171-IBu 0.83 1.00e-04 1.50e-03
Smp_172020.1 SmLINC01431-IBu 0.96 5.56e-09 1.44e-06
Smp_172020.1 SmLINC01435-IBu 0.85 4.85e-05 8.00e-04
Smp_172020.1 SmLINC01538-IBu 0.93 2.51e-07 1.94e-05
Smp_172020.1 SmLINC01569-IBu 0.94 7.42e-08 8.36e-06
Smp_172020.1 SmLINC01733-IBu 0.96 6.49e-09 1.60e-06
Smp_172020.1 SmLINC01746-IBu 0.92 6.73e-07 3.88e-05
Smp_172020.1 SmLINC02084-IBu 0.91 2.51e-06 9.89e-05
Smp_172020.1 SmLINC02394-IBu 0.85 5.92e-05 9.00e-04
Smp_172020.1 SmLINC02546-IBu 0.91 2.39e-06 9.55e-05
Smp_172020.1 SmLINC03309-IBu 0.90 2.59e-06 1.00e-04
Smp_172020.1 SmLINC03693-IBu 0.86 3.65e-05 6.00e-04
Smp_172020.1 SmLINC03927-IBu 0.85 5.35e-05 8.00e-04
Smp_172020.1 SmLINC04345-IBu 0.81 2.00e-04 2.60e-03
Smp_172020.1 SmLINC04421-IBu 0.85 4.55e-05 7.00e-04
Smp_172020.1 SmLINC04423-IBu 0.84 7.01e-05 1.00e-03
Smp_172020.1 SmLINC04432-IBu 0.87 1.57e-05 3.00e-04
Smp_172020.1 SmLINC04475-IBu 0.84 8.53e-05 1.20e-03
Smp_172020.1 SmLINC04478-IBu 0.92 5.83e-07 3.51e-05
Smp_172020.1 SmLINC04521-IBu 0.92 5.84e-07 3.51e-05
Smp_172020.1 SmLINC04637-IBu 0.83 1.00e-04 1.40e-03
Smp_172020.1 SmLINC04663-IBu 0.86 2.58e-05 5.00e-04
Smp_172020.1 SmLINC04684-IBu 0.86 3.55e-05 6.00e-04
Smp_172020.1 SmLINC05147-IBu 0.86 2.55e-05 5.00e-04
Smp_172020.1 SmLINC05258-IBu 0.88 1.19e-05 3.00e-04
Smp_172020.1 SmLINC05289-IBu 0.82 1.00e-04 1.70e-03
Smp_172020.1 SmLINC06010-IBu 0.85 5.93e-05 9.00e-04
Smp_172020.1 SmLINC06024-IBu 0.90 3.97e-06 1.00e-04
Smp_172020.1 SmLINC06145-IBu 0.82 1.00e-04 1.90e-03
Smp_172020.1 SmLINC06221-IBu 0.85 5.38e-05 9.00e-04
Smp_172020.1 SmLINC06418-IBu 0.84 6.82e-05 1.00e-03
Smp_172020.1 SmLINC06444-IBu 0.89 7.35e-06 2.00e-04
Smp_172020.1 SmLINC06449-IBu 0.87 1.56e-05 3.00e-04
Smp_172020.1 SmLINC06490-IBu -0.80 2.00e-04 3.00e-03
Smp_172020.1 SmLINC06537-IBu 0.82 1.00e-04 1.70e-03
Smp_172020.1 SmLINC06543-IBu 0.85 5.54e-05 9.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_020760.2 0 9.23 8.40 12.26 12.26
Smp_031040.1 0 8.57 0.03 12.35 12.40
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_034980.2 0 8.75 0.00 11.30 11.03
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_090140.1 0 2.57 9.09 11.94 12.46
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_159070.2 0 -0.62 -11.03 1.85 1.97
Smp_172020.1 0 0.89 0.19 3.81 4.25
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_172960.1 0 3.27 6.54 14.72 15.13
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_203090.1 0 0.00 0.00 10.35 10.67
Smp_205270.1 0 0.71 -0.40 10.02 9.83

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_020760.2 Smp_172020.1 0.90 2.69e-06 1.00e-04
Smp_031040.1 Smp_172020.1 0.95 1.89e-08 3.50e-06
Smp_033260.1 Smp_172020.1 0.92 7.25e-07 4.26e-05
Smp_034980.2 Smp_172020.1 0.95 5.45e-08 7.16e-06
Smp_038870.2 Smp_172020.1 0.93 2.96e-07 2.28e-05
Smp_040970.2 Smp_172020.1 0.98 2.87e-11 5.33e-08
Smp_050350.3 Smp_172020.1 0.91 1.59e-06 7.42e-05
Smp_052280.2 Smp_172020.1 0.91 1.65e-06 7.59e-05
Smp_056460.1 Smp_172020.1 0.93 5.00e-07 3.28e-05
Smp_172020.1 Smp_079420.1 0.96 5.62e-09 1.56e-06
Smp_090140.1 Smp_172020.1 0.92 7.60e-07 4.40e-05
Smp_094050.1 Smp_172020.1 0.94 1.26e-07 1.26e-05
Smp_095410.1 Smp_172020.1 0.91 1.44e-06 6.90e-05
Smp_137000.2 Smp_172020.1 0.94 1.41e-07 1.37e-05
Smp_145400.1 Smp_172020.1 0.93 4.54e-07 3.07e-05
Smp_150980.2 Smp_172020.1 0.92 1.05e-06 5.54e-05
Smp_159070.2 Smp_172020.1 0.94 1.29e-07 1.29e-05
Smp_172480.1 Smp_172020.1 0.95 5.87e-08 7.53e-06
Smp_172020.1 Smp_172960.1 0.92 7.77e-07 4.47e-05
Smp_194860.1 Smp_172020.1 0.93 2.93e-07 2.26e-05
Smp_203090.1 Smp_172020.1 0.93 2.54e-07 2.05e-05
Smp_205270.1 Smp_172020.1 0.93 3.00e-07 2.30e-05