Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_171610.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00026-IBu 0 1.41 -0.25 -3.45 -4.99
SmLINC01429-IBu 0 1.94 -0.56 -4.06 -6.10
SmLINC01979-IBu 0 1.86 0.63 -5.36 -5.36
SmLINC03111-IBu 0 3.25 1.95 -5.91 -5.91
SmLINC03116-IBu 0 3.51 0.92 -2.09 -5.82
SmLINC03443-IBu 0 2.85 1.67 -0.40 -9.21
SmLINC04129-IBu 0 2.02 -0.05 -5.02 -3.35
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05840-IBu 0 1.40 -1.20 -2.41 -3.85
Smp_171610.1 0 0.35 -0.62 -4.59 -3.11

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_171610.1 SmLINC00026-IBu 0.80 2.00e-04 2.80e-03
Smp_171610.1 SmLINC01429-IBu 0.87 1.79e-05 4.00e-04
Smp_171610.1 SmLINC01979-IBu 0.80 3.00e-04 3.20e-03
Smp_171610.1 SmLINC03111-IBu 0.83 1.00e-04 1.60e-03
Smp_171610.1 SmLINC03116-IBu 0.80 3.00e-04 3.20e-03
Smp_171610.1 SmLINC03443-IBu 0.81 2.00e-04 2.60e-03
Smp_171610.1 SmLINC04129-IBu 0.80 2.00e-04 2.80e-03
Smp_171610.1 SmLINC04271-IBu 0.81 1.00e-04 2.30e-03
Smp_171610.1 SmLINC05274-IBu 0.88 1.41e-05 3.00e-04
Smp_171610.1 SmLINC05840-IBu 0.80 2.00e-04 3.10e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_171610.1 0 0.35 -0.62 -4.59 -3.11
Smp_176230.2 0 0.48 -0.91 -5.65 -11.30

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_171610.1 Smp_176230.2 0.92 9.12e-07 5.00e-05