Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_171540.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00026-IBu 0 1.41 -0.25 -3.45 -4.99
SmLINC00787-IBu 0 1.80 -4.72 -2.61 -3.96
SmLINC01230-IBu 0 6.45 0.00 2.13 3.20
SmLINC01429-IBu 0 1.94 -0.56 -4.06 -6.10
SmLINC01979-IBu 0 1.86 0.63 -5.36 -5.36
SmLINC03111-IBu 0 3.25 1.95 -5.91 -5.91
SmLINC03116-IBu 0 3.51 0.92 -2.09 -5.82
SmLINC03443-IBu 0 2.85 1.67 -0.40 -9.21
SmLINC04129-IBu 0 2.02 -0.05 -5.02 -3.35
SmLINC04144-IBu 0 2.82 -0.04 -0.46 -2.35
SmLINC04693-IBu 0 7.21 3.85 4.35 6.49
SmLINC05178-IBu 0 3.85 -0.08 -1.72 -5.31
SmLINC05840-IBu 0 1.40 -1.20 -2.41 -3.85
SmLINC05887-IBu 0 1.98 -0.51 -2.69 -3.80
SmLINC06138-IBu 0 2.13 -1.25 -2.27 -2.28
SmLINC06436-IBu 0 7.76 4.53 3.89 -2.06
SmLINC06667-IBu 0 5.49 2.05 4.25 3.56
Smp_171540.2 0 1.44 -2.06 -3.96 -2.73

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_171540.2 SmLINC00026-IBu 0.80 3.00e-04 3.20e-03
Smp_171540.2 SmLINC00787-IBu 0.94 8.29e-08 9.02e-06
Smp_171540.2 SmLINC01230-IBu 0.92 6.57e-07 3.81e-05
Smp_171540.2 SmLINC01429-IBu 0.93 4.00e-07 2.69e-05
Smp_171540.2 SmLINC01979-IBu 0.85 5.93e-05 9.00e-04
Smp_171540.2 SmLINC03111-IBu 0.83 1.00e-04 1.50e-03
Smp_171540.2 SmLINC03116-IBu 0.92 9.47e-07 4.93e-05
Smp_171540.2 SmLINC03443-IBu 0.83 1.00e-04 1.50e-03
Smp_171540.2 SmLINC04129-IBu 0.83 1.00e-04 1.60e-03
Smp_171540.2 SmLINC04144-IBu 0.88 9.22e-06 2.00e-04
Smp_171540.2 SmLINC04693-IBu 0.83 1.00e-04 1.60e-03
Smp_171540.2 SmLINC05178-IBu 0.87 2.46e-05 5.00e-04
Smp_171540.2 SmLINC05840-IBu 0.91 1.42e-06 6.58e-05
Smp_171540.2 SmLINC05887-IBu 0.82 1.00e-04 1.70e-03
Smp_171540.2 SmLINC06138-IBu 0.88 1.45e-05 3.00e-04
Smp_171540.2 SmLINC06436-IBu 0.91 1.24e-06 5.99e-05
Smp_171540.2 SmLINC06667-IBu 0.85 4.76e-05 8.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_171540.2 0 1.44 -2.06 -3.96 -2.73
Smp_193700.1 0 2.00 0.59 -11.32 -11.32

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_171540.2 Smp_193700.1 0.91 1.59e-06 7.40e-05