Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_171420.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_171420.1 0 2.93 4.14 1.74 -0.67

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_171420.1 SmLINC00372-IBu 0.89 6.32e-06 1.00e-04
Smp_171420.1 SmLINC01316-IBu 0.84 7.17e-05 1.10e-03
Smp_171420.1 SmLINC02646-IBu 0.86 3.60e-05 6.00e-04
Smp_171420.1 SmLINC04430-IBu 0.85 4.78e-05 8.00e-04
Smp_171420.1 SmLINC05559-IBu 0.81 2.00e-04 2.40e-03
Smp_171420.1 SmLINC06646-IBu 0.84 6.45e-05 1.00e-03
Smp_171420.1 SmLINC06700-IBu 0.93 2.37e-07 1.86e-05
Smp_171420.1 SmLINC06836-IBu 0.87 2.16e-05 4.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_021340.3 0 9.76 11.05 9.34 9.26
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_033950.3 0 10.15 11.01 9.52 8.41
Smp_040970.3 0 11.70 13.01 5.20 8.78
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_062070.1 0 9.47 10.97 6.18 8.79
Smp_084940.2 0 10.34 11.98 9.66 9.92
Smp_098370.1 0 9.63 11.25 6.43 9.48
Smp_099160.4 0 11.96 13.30 11.03 12.32
Smp_103540.1 0 11.43 12.63 8.84 9.65
Smp_159150.1 0 12.28 13.98 12.38 11.81
Smp_171420.1 0 2.93 4.14 1.74 -0.67

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_171420.1 Smp_017650.1 0.93 2.24e-07 1.88e-05
Smp_171420.1 Smp_021340.3 0.95 2.08e-08 3.73e-06
Smp_171420.1 Smp_032120.1 0.91 1.86e-06 8.26e-05
Smp_171420.1 Smp_033950.3 0.92 5.88e-07 3.67e-05
Smp_040970.3 Smp_171420.1 0.95 4.02e-08 5.83e-06
Smp_171420.1 Smp_059340.3 0.90 4.41e-06 1.00e-04
Smp_171420.1 Smp_062070.1 0.91 2.09e-06 8.97e-05
Smp_171420.1 Smp_084940.2 0.91 1.73e-06 7.86e-05
Smp_171420.1 Smp_098370.1 0.94 6.47e-08 8.04e-06
Smp_171420.1 Smp_099160.4 0.96 1.10e-08 2.43e-06
Smp_103540.1 Smp_171420.1 0.92 9.75e-07 5.24e-05
Smp_171420.1 Smp_159150.1 0.91 1.66e-06 7.64e-05