Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_171120.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_171120.1 0 0.37 2.83 3.41 5.05

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_171120.1 SmLINC00001-IBu 0.88 1.14e-05 2.00e-04
Smp_171120.1 SmLINC00004-IBu 0.85 4.17e-05 7.00e-04
Smp_171120.1 SmLINC00556-IBu -0.82 1.00e-04 2.00e-03
Smp_171120.1 SmLINC01520-IBu 0.82 1.00e-04 1.80e-03
Smp_171120.1 SmLINC02029-IBu 0.83 1.00e-04 1.40e-03
Smp_171120.1 SmLINC02255-IBu -0.85 4.40e-05 7.00e-04
Smp_171120.1 SmLINC02376-IBu 0.83 1.00e-04 1.60e-03
Smp_171120.1 SmLINC02394-IBu 0.80 2.00e-04 3.10e-03
Smp_171120.1 SmLINC02539-IBu 0.83 9.61e-05 1.30e-03
Smp_171120.1 SmLINC02577-IBu 0.84 8.71e-05 1.20e-03
Smp_171120.1 SmLINC02630-IBu -0.83 1.00e-04 1.50e-03
Smp_171120.1 SmLINC02657-IBu -0.80 2.00e-04 2.80e-03
Smp_171120.1 SmLINC02783-IBu 0.83 1.00e-04 1.40e-03
Smp_171120.1 SmLINC03326-IBu 0.81 2.00e-04 2.70e-03
Smp_171120.1 SmLINC03658-IBu 0.83 1.00e-04 1.60e-03
Smp_171120.1 SmLINC04235-IBu 0.88 1.30e-05 3.00e-04
Smp_171120.1 SmLINC04627-IBu 0.83 1.00e-04 1.50e-03
Smp_171120.1 SmLINC05284-IBu -0.83 1.00e-04 1.60e-03
Smp_171120.1 SmLINC05289-IBu 0.82 1.00e-04 2.00e-03
Smp_171120.1 SmLINC05604-IBu 0.83 1.00e-04 1.50e-03
Smp_171120.1 SmLINC05684-IBu 0.85 5.48e-05 9.00e-04
Smp_171120.1 SmLINC06239-IBu 0.86 3.60e-05 6.00e-04
Smp_171120.1 SmLINC06535-IBu -0.83 1.00e-04 1.60e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_171120.1 0 0.37 2.83 3.41 5.05

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_171120.1 Smp_159650.1 0.9 3.75e-06 1.00e-04