Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_170840.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04896-IBu 0 -1.86 -3.75 1.58 4.07
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_170840.1 0 3.57 0.00 5.93 11.86

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_170840.1 SmLINC01520-IBu 0.80 2.00e-04 2.80e-03
Smp_170840.1 SmLINC02029-IBu 0.87 2.21e-05 4.00e-04
Smp_170840.1 SmLINC02786-IBu 0.90 3.84e-06 1.00e-04
Smp_170840.1 SmLINC03658-IBu 0.86 2.55e-05 5.00e-04
Smp_170840.1 SmLINC04235-IBu 0.84 7.76e-05 1.10e-03
Smp_170840.1 SmLINC04896-IBu 0.96 4.28e-09 1.21e-06
Smp_170840.1 SmLINC05404-IBu 0.91 1.83e-06 7.90e-05
Smp_170840.1 SmLINC05684-IBu 0.83 1.00e-04 1.40e-03
Smp_170840.1 SmLINC06239-IBu 0.85 5.63e-05 9.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00044-IBu 0 0.32 -0.24 0.16 8.57
SmLINC00394-IBu 0 -0.50 -1.27 2.08 7.78
SmLINC00714-IBu 0 0.00 5.32 7.47 9.97
SmLINC00715-IBu 0 0.00 0.00 7.79 9.66
SmLINC00890-IBu 0 0.00 0.00 3.45 7.41
SmLINC01330-IBu 0 1.65 1.89 5.35 8.80
SmLINC02117-IBu 0 -4.43 -0.46 1.87 4.79
SmLINC02333-IBu 0 0.43 -0.92 -2.19 4.81
SmLINC02527-IBu 0 0.00 0.00 2.95 7.34
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03685-IBu 0 5.50 2.12 3.49 9.24
SmLINC04088-IBu 0 -1.76 -2.21 1.40 5.36
SmLINC04896-IBu 0 -1.86 -3.75 1.58 4.07
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05996-IBu 0 0.00 3.21 2.03 9.08
SmLINC06000-IBu 0 1.88 0.00 3.45 9.47
SmLINC06076-IBu 0 0.00 0.00 1.47 6.53
SmLINC06801-IBu 0 -0.54 0.90 -0.25 5.25
Smp_031020.1 0 2.29 0.46 -0.25 5.32
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_056350.1 0 0.33 1.23 3.20 6.26
Smp_063520.1 0 3.75 2.97 5.08 8.02
Smp_074710.1 0 -1.43 -2.06 -1.85 3.56
Smp_078720.1 0 1.88 0.00 3.32 8.87
Smp_083800.1 0 0.54 -0.03 3.09 8.86
Smp_089270.1 0 3.49 0.00 4.50 10.21
Smp_125010.1 0 2.81 -1.83 1.12 5.46
Smp_137460.1 0 4.80 0.00 4.12 10.48
Smp_141450.2 0 3.72 3.76 3.69 9.11
Smp_145490.1 0 3.57 3.53 3.37 9.86
Smp_146810.1 0 0.41 0.21 2.10 6.19
Smp_148390.1 0 2.10 -2.34 1.95 8.66
Smp_149490.1 0 0.92 1.54 2.36 4.88
Smp_151560.1 0 2.28 2.16 3.43 5.85
Smp_152150.1 0 0.00 0.00 8.69 15.96
Smp_152910.1 0 -3.44 -2.76 -1.50 2.86
Smp_154390.1 0 1.91 0.76 3.80 7.69
Smp_157690.1 0 0.42 0.58 4.07 8.62
Smp_158150.1 0 -5.55 -5.55 2.64 8.31
Smp_158750.1 0 2.85 3.23 3.32 7.52
Smp_159920.1 0 1.39 1.19 3.96 6.50
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_166100.1 0 -0.74 -0.09 1.45 4.23
Smp_166560.1 0 0.51 0.40 -0.15 4.81
Smp_166690.1 0 0.00 3.50 0.00 7.76
Smp_167830.1 0 0.00 0.00 6.17 12.87
Smp_169090.1 0 -2.46 -3.97 -0.35 4.24
Smp_170840.1 0 3.57 0.00 5.93 11.86
Smp_172340.1 0 1.14 -3.01 0.24 3.66
Smp_172980.1 0 -2.44 -2.43 2.35 5.58
Smp_174530.1 0 1.07 -3.50 -0.45 5.30
Smp_179600.1 0 -1.93 -1.93 -1.93 5.34
Smp_179710.1 0 0.24 -0.01 -0.87 4.04
Smp_200410.1 0 -1.15 -0.28 0.00 3.81
Smp_212430.1 0 1.72 5.10 5.71 7.78
Smp_213420.1 0 0.19 1.45 1.85 4.67

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_170840.1 SmLINC00044-IBu 0.98 4.79e-12 1.75e-08
Smp_170840.1 SmLINC00394-IBu 0.91 1.58e-06 7.38e-05
Smp_170840.1 SmLINC00714-IBu 0.93 4.34e-07 2.97e-05
Smp_170840.1 SmLINC00715-IBu 0.90 2.73e-06 1.00e-04
Smp_170840.1 SmLINC00890-IBu 0.95 3.79e-08 5.60e-06
Smp_170840.1 SmLINC01330-IBu 0.91 2.42e-06 9.96e-05
Smp_170840.1 SmLINC02117-IBu 0.94 7.99e-08 9.28e-06
Smp_170840.1 SmLINC02333-IBu 0.92 8.35e-07 4.70e-05
Smp_170840.1 SmLINC02527-IBu 0.94 1.85e-07 1.65e-05
Smp_170840.1 SmLINC02786-IBu 0.90 3.84e-06 1.00e-04
Smp_170840.1 SmLINC03685-IBu 0.96 4.81e-09 1.40e-06
Smp_170840.1 SmLINC04088-IBu 0.94 1.07e-07 1.13e-05
Smp_170840.1 SmLINC04896-IBu 0.96 4.28e-09 1.30e-06
Smp_170840.1 SmLINC05404-IBu 0.91 1.83e-06 8.18e-05
Smp_170840.1 SmLINC05996-IBu 0.95 1.49e-08 2.99e-06
Smp_170840.1 SmLINC06000-IBu 0.92 9.30e-07 5.07e-05
Smp_170840.1 SmLINC06076-IBu 0.91 2.00e-06 8.70e-05
Smp_170840.1 SmLINC06801-IBu 0.98 3.14e-11 5.64e-08
Smp_170840.1 Smp_031020.1 0.93 2.71e-07 2.15e-05
Smp_041540.1 Smp_170840.1 0.93 3.38e-07 2.50e-05
Smp_056350.1 Smp_170840.1 0.93 4.38e-07 2.99e-05
Smp_170840.1 Smp_063520.1 0.90 4.45e-06 1.00e-04
Smp_170840.1 Smp_074710.1 0.95 3.73e-08 5.54e-06
Smp_170840.1 Smp_078720.1 0.94 8.95e-08 1.00e-05
Smp_083800.1 Smp_170840.1 0.93 1.96e-07 1.71e-05
Smp_089270.1 Smp_170840.1 0.99 4.07e-17 9.57e-12
Smp_125010.1 Smp_170840.1 0.90 3.39e-06 1.00e-04
Smp_137460.1 Smp_170840.1 0.91 1.23e-06 6.19e-05
Smp_170840.1 Smp_141450.2 0.95 5.45e-08 7.16e-06
Smp_145490.1 Smp_170840.1 0.92 1.03e-06 5.46e-05
Smp_170840.1 Smp_146810.1 0.94 7.77e-08 9.11e-06
Smp_170840.1 Smp_148390.1 0.94 1.24e-07 1.25e-05
Smp_170840.1 Smp_149490.1 0.95 5.80e-08 7.46e-06
Smp_170840.1 Smp_151560.1 0.93 4.78e-07 3.18e-05
Smp_152150.1 Smp_170840.1 0.96 4.06e-09 1.26e-06
Smp_152910.1 Smp_170840.1 0.95 2.65e-08 4.39e-06
Smp_170840.1 Smp_154390.1 0.94 1.67e-07 1.54e-05
Smp_157690.1 Smp_170840.1 0.92 9.14e-07 5.00e-05
Smp_170840.1 Smp_158150.1 0.90 4.07e-06 1.00e-04
Smp_170840.1 Smp_158750.1 0.92 7.46e-07 4.34e-05
Smp_170840.1 Smp_159920.1 0.92 9.91e-07 5.30e-05
Smp_164400.1 Smp_170840.1 0.94 9.54e-08 1.04e-05
Smp_170840.1 Smp_166100.1 0.90 2.88e-06 1.00e-04
Smp_166560.1 Smp_170840.1 0.94 9.58e-08 1.05e-05
Smp_166690.1 Smp_170840.1 0.95 2.21e-08 3.88e-06
Smp_170840.1 Smp_167830.1 0.99 2.05e-16 2.92e-11
Smp_169090.1 Smp_170840.1 0.95 4.28e-08 6.08e-06
Smp_170840.1 Smp_172340.1 0.90 3.91e-06 1.00e-04
Smp_172980.1 Smp_170840.1 0.93 2.74e-07 2.16e-05
Smp_170840.1 Smp_174530.1 0.93 3.01e-07 2.31e-05
Smp_179600.1 Smp_170840.1 0.94 7.28e-08 8.72e-06
Smp_170840.1 Smp_179710.1 0.97 7.63e-10 4.28e-07
Smp_170840.1 Smp_200410.1 0.97 3.40e-10 2.56e-07
Smp_170840.1 Smp_212430.1 0.92 9.41e-07 5.11e-05
Smp_170840.1 Smp_213420.1 0.90 3.28e-06 1.00e-04