Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_170800.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_170800.1 0 -1.03 -10.36 -11.70 -1.07

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_170800.1 SmLINC06890-IBu 0.88 1.48e-05 3.00e-04
Smp_170800.1 SmLINC06903-IBu 0.83 1.00e-04 1.40e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00093-IBu 0 -1.11 -3.33 -5.06 -7.16
SmLINC00568-IBu 0 -1.41 -4.15 -10.91 -11.85
Smp_034420.1 0 -1.76 -6.68 -4.27 -4.65
Smp_096020.1 0 -1.77 -8.42 -9.21 -10.05
Smp_170800.1 0 -1.03 -10.36 -11.70 -1.07
Smp_178630.1 0 -1.78 -5.50 -9.26 -9.26
Smp_205860.1 0 -1.49 -2.52 -10.82 -15.29

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_170800.1 SmLINC00093-IBu 0.91 1.26e-06 6.29e-05
Smp_170800.1 SmLINC00568-IBu 0.90 4.67e-06 1.00e-04
Smp_170800.1 Smp_034420.1 0.94 1.64e-07 1.52e-05
Smp_170800.1 Smp_096020.1 0.94 1.02e-07 1.10e-05
Smp_178630.1 Smp_170800.1 0.90 3.78e-06 1.00e-04
Smp_205860.1 Smp_170800.1 0.92 6.75e-07 4.05e-05