Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_170650.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00171-IBu 0 -0.59 -5.27 3.90 3.47
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC05009-IBu 0 0.41 -0.30 3.78 1.52
Smp_170650.1 0 6.39 7.50 7.95 7.81

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_170650.1 SmLINC00171-IBu 0.80 2.00e-04 2.90e-03
Smp_170650.1 SmLINC01066-IBu 0.83 1.00e-04 1.40e-03
Smp_170650.1 SmLINC04684-IBu 0.81 1.00e-04 2.20e-03
Smp_170650.1 SmLINC05009-IBu 0.80 3.00e-04 3.10e-03