Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_169720.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00893-IBu 0 1.08 -1.15 -3.04 -4.37
SmLINC04178-IBu 0 2.31 -5.42 -4.19 -7.97
SmLINC05840-IBu 0 1.40 -1.20 -2.41 -3.85
SmLINC06138-IBu 0 2.13 -1.25 -2.27 -2.28
Smp_169720.1 0 0.44 -8.54 -8.54 -8.54

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_169720.1 SmLINC00893-IBu 0.81 2.00e-04 2.50e-03
Smp_169720.1 SmLINC04178-IBu 0.85 4.92e-05 8.00e-04
Smp_169720.1 SmLINC05840-IBu 0.80 3.00e-04 3.40e-03
Smp_169720.1 SmLINC06138-IBu 0.80 3.00e-04 3.40e-03