Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_168950.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00554-IBu 0 -0.37 -11.45 -11.45 -2.78
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
Smp_168950.1 0 -0.96 -1.82 -4.29 -4.36

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_168950.1 SmLINC00001-IBu -0.84 7.09e-05 1.10e-03
Smp_168950.1 SmLINC00004-IBu -0.85 4.33e-05 7.00e-04
Smp_168950.1 SmLINC00369-IBu -0.85 4.78e-05 8.00e-04
Smp_168950.1 SmLINC00554-IBu 0.83 1.00e-04 1.40e-03
Smp_168950.1 SmLINC00556-IBu 0.90 4.47e-06 1.00e-04
Smp_168950.1 SmLINC00633-IBu -0.80 3.00e-04 3.40e-03
Smp_168950.1 SmLINC01084-IBu -0.84 6.32e-05 1.00e-03
Smp_168950.1 SmLINC01122-IBu -0.81 2.00e-04 2.40e-03
Smp_168950.1 SmLINC01431-IBu -0.88 1.36e-05 3.00e-04
Smp_168950.1 SmLINC01432-IBu -0.83 9.22e-05 1.30e-03
Smp_168950.1 SmLINC01569-IBu -0.80 2.00e-04 2.80e-03
Smp_168950.1 SmLINC01733-IBu -0.80 2.00e-04 2.70e-03
Smp_168950.1 SmLINC02084-IBu -0.85 5.79e-05 9.00e-04
Smp_168950.1 SmLINC02255-IBu 0.84 8.40e-05 1.20e-03
Smp_168950.1 SmLINC02394-IBu -0.82 1.00e-04 1.90e-03
Smp_168950.1 SmLINC02546-IBu -0.81 1.00e-04 2.20e-03
Smp_168950.1 SmLINC02657-IBu 0.81 2.00e-04 2.60e-03
Smp_168950.1 SmLINC02888-IBu 0.87 2.02e-05 4.00e-04
Smp_168950.1 SmLINC03927-IBu -0.82 1.00e-04 1.80e-03
Smp_168950.1 SmLINC04421-IBu -0.85 4.75e-05 8.00e-04
Smp_168950.1 SmLINC04423-IBu -0.82 1.00e-04 2.00e-03
Smp_168950.1 SmLINC04478-IBu -0.81 2.00e-04 2.70e-03
Smp_168950.1 SmLINC04521-IBu -0.81 1.00e-04 2.30e-03
Smp_168950.1 SmLINC05147-IBu -0.81 1.00e-04 2.20e-03
Smp_168950.1 SmLINC05274-IBu 0.94 1.85e-07 1.57e-05
Smp_168950.1 SmLINC05289-IBu -0.83 1.00e-04 1.50e-03
Smp_168950.1 SmLINC05604-IBu -0.84 8.68e-05 1.20e-03
Smp_168950.1 SmLINC06024-IBu -0.81 1.00e-04 2.10e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_168950.1 0 -0.96 -1.82 -4.29 -4.36
Smp_169670.1 0 0.00 8.19 10.09 10.85

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_168950.1 Smp_052280.2 -0.92 8.33e-07 4.69e-05
Smp_168950.1 Smp_169670.1 -0.92 1.10e-06 5.73e-05