Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_168800.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC01979-IBu 0 1.86 0.63 -5.36 -5.36
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC03395-IBu 0 1.75 0.29 -4.35 -2.74
SmLINC04074-IBu 0 7.29 6.66 0.00 0.00
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06489-IBu 0 0.79 0.67 -4.22 -4.27
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_168800.1 0 0.13 -0.51 -10.46 -10.46

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_168800.1 SmLINC00372-IBu 0.88 1.25e-05 3.00e-04
Smp_168800.1 SmLINC01316-IBu 0.89 5.45e-06 1.00e-04
Smp_168800.1 SmLINC01979-IBu 0.80 2.00e-04 2.70e-03
Smp_168800.1 SmLINC02646-IBu 0.92 1.14e-06 5.65e-05
Smp_168800.1 SmLINC03395-IBu 0.82 1.00e-04 1.90e-03
Smp_168800.1 SmLINC04074-IBu 0.87 1.66e-05 3.00e-04
Smp_168800.1 SmLINC06024-IBu -0.80 2.00e-04 3.00e-03
Smp_168800.1 SmLINC06489-IBu 0.80 3.00e-04 3.40e-03
Smp_168800.1 SmLINC06490-IBu 0.92 6.00e-07 3.57e-05
Smp_168800.1 SmLINC06646-IBu 0.90 2.77e-06 1.00e-04
Smp_168800.1 SmLINC06700-IBu 0.84 6.79e-05 1.00e-03
Smp_168800.1 SmLINC06836-IBu 0.83 1.00e-04 1.50e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00781-IBu 0 6.19 6.44 3.58 2.95
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC02993-IBu 0 0.30 0.61 -4.78 -4.38
SmLINC04001-IBu 0 0.59 0.46 -3.65 -5.58
SmLINC04013-IBu 0 2.82 2.74 -0.16 -1.45
SmLINC04065-IBu 0 1.68 2.43 -5.86 -2.73
SmLINC04104-IBu 0 -0.23 0.06 -4.29 -6.53
SmLINC04259-IBu 0 0.67 0.50 -4.21 -5.86
SmLINC05906-IBu 0 0.43 -0.01 -5.65 -6.57
SmLINC06048-IBu 0 0.79 1.93 -4.19 -7.12
SmLINC06287-IBu 0 0.35 0.50 -4.73 -4.57
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
SmLINC06839-IBu 0 -0.39 0.65 -6.55 -6.90
SmLINC06840-IBu 0 0.80 0.49 -6.42 -8.05
SmLINC07014-IBu 0 0.31 0.27 -11.64 -11.64
SmLINC07016-IBu 0 1.89 2.73 -4.50 -5.17
Smp_011660.2 0 -0.07 -0.17 -3.53 -4.85
Smp_012010.1 0 0.26 0.29 -5.48 -5.97
Smp_018590.1 0 0.89 1.74 -2.48 -5.97
Smp_022320.1 0 0.31 -0.15 -2.49 -6.20
Smp_024820.1 0 4.10 4.75 1.46 1.82
Smp_027990.1 0 1.00 2.03 -4.13 -5.46
Smp_031770.3 0 0.52 1.55 -9.48 -9.48
Smp_032750.1 0 0.69 0.55 -6.01 -6.60
Smp_034840.2 0 -0.14 -0.56 -4.27 -4.43
Smp_036270.3 0 1.18 2.21 -10.17 -10.17
Smp_044550.1 0 -0.20 0.07 -4.58 -3.40
Smp_049600.3 0 1.80 2.94 -9.17 -1.90
Smp_052290.1 0 1.68 2.86 -1.36 -2.94
Smp_054750.1 0 -0.22 -0.71 -3.93 -4.21
Smp_059210.7 0 0.04 -0.34 -3.63 -6.60
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_062610.2 0 -1.05 -0.32 -6.81 -10.38
Smp_068270.3 0 4.48 4.31 -7.70 1.13
Smp_077820.1 0 -0.65 -0.64 -4.87 -7.00
Smp_079260.1 0 1.54 2.23 -2.79 -3.15
Smp_080280.1 0 -0.42 -0.06 -4.59 -4.87
Smp_092780.1 0 -0.13 -0.30 -4.81 -4.98
Smp_093690.1 0 0.09 0.67 -3.40 -3.42
Smp_099560.1 0 8.15 8.89 -2.27 -2.27
Smp_106750.1 0 0.07 1.73 -5.83 -8.52
Smp_112930.1 0 1.35 2.48 -6.71 -8.42
Smp_123870.1 0 -0.64 -0.72 -4.74 -5.09
Smp_126560.1 0 1.05 1.45 -4.09 -4.98
Smp_136840.1 0 1.29 1.39 -6.10 -6.10
Smp_137330.1 0 -0.19 -0.00 -4.27 -3.94
Smp_138140.1 0 2.02 2.69 -3.31 -2.76
Smp_139980.1 0 1.20 1.27 -1.25 -4.01
Smp_142980.1 0 0.95 0.31 -2.54 -3.71
Smp_143180.1 0 1.31 2.18 -4.27 -1.25
Smp_149220.1 0 0.14 0.72 -3.31 -3.61
Smp_149870.1 0 0.08 0.15 -3.14 -8.77
Smp_151220.1 0 1.28 1.74 -3.16 -3.91
Smp_152170.1 0 2.88 3.15 -0.68 -0.83
Smp_152900.1 0 -0.24 0.96 -3.27 -3.63
Smp_155690.1 0 0.49 1.13 -3.13 -4.07
Smp_157270.1 0 3.45 4.02 -0.36 -1.80
Smp_158680.1 0 0.18 0.75 -3.19 -3.53
Smp_159380.1 0 0.56 1.21 -4.02 -3.82
Smp_160000.1 0 0.21 0.15 -4.03 -4.29
Smp_160670.1 0 1.07 2.08 -4.35 -3.20
Smp_161270.1 0 1.27 1.64 -8.43 -8.43
Smp_161280.1 0 1.17 1.48 -9.00 -4.95
Smp_168800.1 0 0.13 -0.51 -10.46 -10.46
Smp_169500.1 0 1.36 1.90 -2.93 -5.45
Smp_174750.1 0 1.35 2.65 -1.87 -1.39
Smp_180050.1 0 1.06 0.86 -2.29 -5.29
Smp_180630.1 0 0.12 1.09 -6.32 -9.26
Smp_189180.2 0 -0.25 -0.54 -4.07 -4.89
Smp_190900.1 0 0.50 -0.24 -3.60 -3.79
Smp_194110.1 0 0.85 0.42 -9.97 -9.97
Smp_194140.1 0 0.06 0.11 -9.88 -9.88
Smp_196410.1 0 0.98 1.80 -3.57 -2.94
Smp_197150.1 0 -0.08 0.36 -3.43 -4.33
Smp_200120.1 0 0.50 0.80 -8.32 -11.63
Smp_202260.1 0 -1.57 -6.78 0.16 1.04
Smp_205050.1 0 0.07 1.73 -5.83 -8.52

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_168800.1 SmLINC00781-IBu 0.92 1.03e-06 5.45e-05
Smp_168800.1 SmLINC02646-IBu 0.92 1.14e-06 5.87e-05
Smp_168800.1 SmLINC02993-IBu 0.92 8.07e-07 4.59e-05
Smp_168800.1 SmLINC04001-IBu 0.95 3.02e-08 4.80e-06
Smp_168800.1 SmLINC04013-IBu 0.90 2.55e-06 1.00e-04
Smp_168800.1 SmLINC04065-IBu 0.91 2.11e-06 9.04e-05
Smp_168800.1 SmLINC04104-IBu 0.94 1.07e-07 1.13e-05
Smp_168800.1 SmLINC04259-IBu 0.92 8.10e-07 4.60e-05
Smp_168800.1 SmLINC05906-IBu 0.93 2.97e-07 2.29e-05
Smp_168800.1 SmLINC06048-IBu 0.93 2.18e-07 1.85e-05
Smp_168800.1 SmLINC06287-IBu 0.90 2.99e-06 1.00e-04
Smp_168800.1 SmLINC06490-IBu 0.92 6.00e-07 3.73e-05
Smp_168800.1 SmLINC06646-IBu 0.90 2.77e-06 1.00e-04
Smp_168800.1 SmLINC06839-IBu 0.92 7.58e-07 4.39e-05
Smp_168800.1 SmLINC06840-IBu 0.95 1.79e-08 3.37e-06
Smp_168800.1 SmLINC07014-IBu 0.94 1.59e-07 1.48e-05
Smp_168800.1 SmLINC07016-IBu 0.92 1.13e-06 5.83e-05
Smp_168800.1 Smp_011660.2 0.93 4.12e-07 2.87e-05
Smp_012010.1 Smp_168800.1 0.95 4.59e-08 6.37e-06
Smp_018590.1 Smp_168800.1 0.94 9.07e-08 1.01e-05
Smp_022320.1 Smp_168800.1 0.95 2.73e-08 4.48e-06
Smp_024820.1 Smp_168800.1 0.90 3.78e-06 1.00e-04
Smp_027990.1 Smp_168800.1 0.94 1.64e-07 1.52e-05
Smp_031770.3 Smp_168800.1 0.93 2.51e-07 2.03e-05
Smp_032750.1 Smp_168800.1 0.90 2.61e-06 1.00e-04
Smp_034840.2 Smp_168800.1 0.94 1.27e-07 1.27e-05
Smp_168800.1 Smp_036270.3 0.93 2.89e-07 2.24e-05
Smp_168800.1 Smp_044550.1 0.90 4.14e-06 1.00e-04
Smp_049600.3 Smp_168800.1 0.92 9.28e-07 5.06e-05
Smp_168800.1 Smp_052290.1 0.90 3.14e-06 1.00e-04
Smp_054750.1 Smp_168800.1 0.93 2.68e-07 2.13e-05
Smp_059210.7 Smp_168800.1 0.90 4.12e-06 1.00e-04
Smp_168800.1 Smp_059340.3 0.94 6.09e-08 7.72e-06
Smp_062610.2 Smp_168800.1 0.90 2.94e-06 1.00e-04
Smp_168800.1 Smp_068270.3 0.90 2.91e-06 1.00e-04
Smp_168800.1 Smp_077820.1 0.91 1.76e-06 7.97e-05
Smp_079260.1 Smp_168800.1 0.92 5.72e-07 3.61e-05
Smp_080280.1 Smp_168800.1 0.94 1.12e-07 1.17e-05
Smp_168800.1 Smp_092780.1 0.94 1.38e-07 1.35e-05
Smp_168800.1 Smp_093690.1 0.92 1.12e-06 5.79e-05
Smp_099560.1 Smp_168800.1 0.93 4.31e-07 2.96e-05
Smp_106750.1 Smp_168800.1 0.90 4.58e-06 1.00e-04
Smp_112930.1 Smp_168800.1 0.91 1.49e-06 7.07e-05
Smp_168800.1 Smp_123870.1 0.95 3.56e-08 5.37e-06
Smp_168800.1 Smp_126560.1 0.91 1.25e-06 6.25e-05
Smp_168800.1 Smp_136840.1 0.91 1.21e-06 6.12e-05
Smp_137330.1 Smp_168800.1 0.93 4.41e-07 3.01e-05
Smp_138140.1 Smp_168800.1 0.93 2.55e-07 2.06e-05
Smp_139980.1 Smp_168800.1 0.92 6.47e-07 3.93e-05
Smp_142980.1 Smp_168800.1 0.90 3.10e-06 1.00e-04
Smp_143180.1 Smp_168800.1 0.92 7.50e-07 4.36e-05
Smp_149220.1 Smp_168800.1 0.96 2.71e-09 9.69e-07
Smp_149870.1 Smp_168800.1 0.94 6.98e-08 8.47e-06
Smp_168800.1 Smp_151220.1 0.95 4.14e-08 5.94e-06
Smp_152170.1 Smp_168800.1 0.90 3.60e-06 1.00e-04
Smp_152900.1 Smp_168800.1 0.92 1.14e-06 5.86e-05
Smp_155690.1 Smp_168800.1 0.94 1.12e-07 1.17e-05
Smp_157270.1 Smp_168800.1 0.91 1.75e-06 7.93e-05
Smp_168800.1 Smp_158680.1 0.94 1.63e-07 1.51e-05
Smp_168800.1 Smp_159380.1 0.96 1.10e-08 2.43e-06
Smp_160000.1 Smp_168800.1 0.91 2.31e-06 9.64e-05
Smp_168800.1 Smp_160670.1 0.92 5.24e-07 3.39e-05
Smp_168800.1 Smp_161270.1 0.94 6.68e-08 8.22e-06
Smp_161280.1 Smp_168800.1 0.92 6.50e-07 3.94e-05
Smp_169500.1 Smp_168800.1 0.92 9.40e-07 5.10e-05
Smp_174750.1 Smp_168800.1 0.91 2.07e-06 8.93e-05
Smp_168800.1 Smp_180050.1 0.93 3.89e-07 2.76e-05
Smp_180630.1 Smp_168800.1 0.92 1.07e-06 5.61e-05
Smp_189180.2 Smp_168800.1 0.98 1.40e-11 3.40e-08
Smp_168800.1 Smp_190900.1 0.92 5.23e-07 3.39e-05
Smp_194110.1 Smp_168800.1 0.96 3.27e-09 1.09e-06
Smp_168800.1 Smp_194140.1 0.90 3.01e-06 1.00e-04
Smp_196410.1 Smp_168800.1 0.93 2.72e-07 2.15e-05
Smp_197150.1 Smp_168800.1 0.93 2.26e-07 1.89e-05
Smp_200120.1 Smp_168800.1 0.95 1.99e-08 3.63e-06
Smp_202260.1 Smp_168800.1 -0.91 2.38e-06 9.85e-05
Smp_205050.1 Smp_168800.1 0.90 4.58e-06 1.00e-04