Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_168080.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05632-IBu 0 4.56 6.06 7.28 6.53
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC05990-IBu 0 9.67 10.42 11.79 11.49
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_168080.2 0 -1.01 -12.06 -12.06 -12.06

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_168080.2 SmLINC00133-IBu 0.82 1.00e-04 1.80e-03
Smp_168080.2 SmLINC00282-IBu 0.86 3.91e-05 7.00e-04
Smp_168080.2 SmLINC02255-IBu 0.86 2.49e-05 5.00e-04
Smp_168080.2 SmLINC02630-IBu 0.84 6.46e-05 1.00e-03
Smp_168080.2 SmLINC02657-IBu 0.85 5.17e-05 8.00e-04
Smp_168080.2 SmLINC03769-IBu 0.81 1.00e-04 2.20e-03
Smp_168080.2 SmLINC03848-IBu 0.88 9.17e-06 2.00e-04
Smp_168080.2 SmLINC03930-IBu 0.87 1.55e-05 3.00e-04
Smp_168080.2 SmLINC05284-IBu 0.81 1.00e-04 2.10e-03
Smp_168080.2 SmLINC05632-IBu -0.80 2.00e-04 2.90e-03
Smp_168080.2 SmLINC05989-IBu 0.83 9.38e-05 1.30e-03
Smp_168080.2 SmLINC05990-IBu -0.82 1.00e-04 1.70e-03
Smp_168080.2 SmLINC06128-IBu 0.87 2.37e-05 4.00e-04
Smp_168080.2 SmLINC06535-IBu 0.90 3.29e-06 1.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00466-IBu 0 -0.03 -2.49 -5.09 -7.41
SmLINC00565-IBu 0 -1.33 -5.82 -10.51 -4.87
SmLINC00872-IBu 0 -0.26 -4.11 -7.20 -4.24
SmLINC01341-IBu 0 -0.38 -2.69 -3.98 -4.09
SmLINC02042-IBu 0 -0.18 -2.36 -6.62 -7.23
SmLINC02317-IBu 0 -0.23 -5.11 -7.32 -7.30
SmLINC02455-IBu 0 -0.81 -2.44 -4.53 -4.60
SmLINC04166-IBu 0 -0.32 -5.44 -5.44 -5.07
SmLINC04214-IBu 0 -0.71 -1.81 -4.24 -4.23
SmLINC04450-IBu 0 -0.63 -2.31 -4.52 -5.41
SmLINC04598-IBu 0 -0.68 -2.61 -7.38 -7.35
SmLINC04606-IBu 0 -0.48 -2.83 -5.66 -8.00
SmLINC04864-IBu 0 -1.31 -6.10 -2.71 -3.51
SmLINC05307-IBu 0 -0.24 -3.06 -4.14 -6.23
SmLINC05569-IBu 0 -0.09 -2.66 -11.90 -11.90
SmLINC06111-IBu 0 -0.47 -2.79 -12.47 -8.65
SmLINC06240-IBu 0 -1.33 -10.34 -6.03 -6.09
SmLINC06405-IBu 0 -1.11 -2.49 -5.22 -6.11
SmLINC06441-IBu 0 -0.94 -2.22 -5.00 -6.40
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06852-IBu 0 -0.66 -1.67 -3.89 -4.94
SmLINC06982-IBu 0 -0.48 -2.87 -3.87 -4.33
Smp_000380.1 0 -0.32 -2.14 -6.41 -7.59
Smp_004230.1 0 -1.29 -9.36 -9.36 -9.36
Smp_008370.1 0 -0.81 -6.37 -2.14 -2.89
Smp_009310.1 0 -0.72 -2.94 -4.33 -4.64
Smp_018510.1 0 -0.95 -2.76 -7.05 -6.82
Smp_021060.1 0 -1.00 -2.60 -4.96 -6.87
Smp_032920.1 0 -0.45 -4.95 -3.51 -6.20
Smp_032970.1 0 -0.24 -2.98 -11.57 -7.79
Smp_034940.3 0 -1.53 -6.25 -9.66 -13.38
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_038730.10 0 -0.83 -3.49 -7.38 -8.47
Smp_042160.2 0 -1.15 -4.96 -5.11 -6.09
Smp_051230.3 0 -1.49 -4.66 -6.27 -4.15
Smp_051230.4 0 -1.10 -5.26 -12.47 -12.47
Smp_051670.1 0 -0.76 -2.49 -6.26 -8.85
Smp_056680.2 0 0.01 -3.20 -6.32 -3.44
Smp_056680.3 0 0.01 -3.20 -6.32 -3.44
Smp_061580.1 0 -1.55 -4.87 -3.14 -2.48
Smp_067980.1 0 -0.94 -11.67 -4.00 -4.18
Smp_072190.1 0 2.22 3.60 4.36 5.21
Smp_076040.3 0 -0.55 -3.71 -3.72 -3.34
Smp_077690.1 0 -0.88 -2.98 -12.11 -12.11
Smp_083180.1 0 -1.30 -10.31 -10.31 -10.31
Smp_095460.1 0 -0.21 -2.74 -7.08 -8.45
Smp_097750.1 0 -1.63 -3.99 -4.48 -3.56
Smp_100790.1 0 -1.29 -9.36 -9.36 -9.36
Smp_104000.1 0 0.62 1.49 3.28 4.39
Smp_110400.3 0 -1.47 -2.30 -8.95 -9.88
Smp_114740.1 0 -1.29 -9.36 -9.36 -9.36
Smp_119050.1 0 -1.30 -4.96 -4.14 -6.99
Smp_122020.1 0 -0.55 -2.82 -5.25 -6.91
Smp_124150.1 0 -1.14 -4.97 -8.99 -7.14
Smp_124830.1 0 -0.28 -9.93 -2.55 -3.33
Smp_128900.1 0 -0.43 -1.87 -6.58 -7.65
Smp_139790.1 0 -0.75 -6.56 -6.76 -3.63
Smp_145710.1 0 -1.79 -2.79 -7.90 -7.78
Smp_150450.1 0 -0.77 -4.60 -4.36 -4.30
Smp_157390.1 0 3.34 4.15 5.22 5.62
Smp_157450.1 0 -1.07 -2.97 -4.27 -4.05
Smp_159900.1 0 -1.03 -2.21 -4.34 -4.82
Smp_160000.2 0 6.42 8.33 8.49 8.70
Smp_162070.1 0 -0.47 -3.26 -7.76 -6.95
Smp_162370.1 0 -1.45 -4.56 -9.04 -5.93
Smp_167350.1 0 -0.80 -1.92 -3.39 -6.34
Smp_167680.2 0 -0.35 -3.78 -5.67 -5.45
Smp_168080.2 0 -1.01 -12.06 -12.06 -12.06
Smp_174520.1 0 -1.49 -5.54 -1.86 -3.92
Smp_178400.1 0 -0.69 -3.92 -8.55 -3.91
Smp_178960.1 0 -0.22 -5.20 -9.36 -7.07
Smp_182770.1 0 -1.46 -4.03 -8.25 -8.62
Smp_185220.1 0 -1.31 -3.59 -4.11 -4.96
Smp_185370.1 0 -0.81 -2.32 -9.88 -9.93
Smp_187590.1 0 -0.60 -3.82 -4.10 -3.89
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76
Smp_191250.1 0 -0.43 -3.38 -7.55 -8.30
Smp_194830.1 0 -0.36 -5.36 -4.51 -3.97
Smp_195060.1 0 -0.69 -4.00 -2.76 -3.57
Smp_195070.1 0 -1.13 -9.73 -18.26 -16.31
Smp_197430.1 0 -1.10 -5.36 -5.36 -2.98
Smp_199470.1 0 -0.59 -3.42 -6.26 -6.59
Smp_199850.1 0 -0.54 -1.71 -4.55 -4.12
Smp_202140.1 0 -1.27 -3.64 -10.44 -10.44
Smp_203770.1 0 -0.07 -1.61 -3.55 -6.15
Smp_210240.1 0 2.43 4.48 5.60 5.96
Smp_212290.1 0 -0.97 -5.67 -5.14 -6.52

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_168080.2 SmLINC00466-IBu 0.90 2.87e-06 1.00e-04
Smp_168080.2 SmLINC00565-IBu 0.93 3.48e-07 2.55e-05
Smp_168080.2 SmLINC00872-IBu 0.90 3.93e-06 1.00e-04
Smp_168080.2 SmLINC01341-IBu 0.95 5.63e-08 7.32e-06
Smp_168080.2 SmLINC02042-IBu 0.90 3.13e-06 1.00e-04
Smp_168080.2 SmLINC02317-IBu 0.92 5.27e-07 3.40e-05
Smp_168080.2 SmLINC02455-IBu 0.93 2.39e-07 1.97e-05
Smp_168080.2 SmLINC04166-IBu 0.95 1.66e-08 3.20e-06
Smp_168080.2 SmLINC04214-IBu 0.91 1.46e-06 6.97e-05
Smp_168080.2 SmLINC04450-IBu 0.94 1.44e-07 1.39e-05
Smp_168080.2 SmLINC04598-IBu 0.96 6.84e-09 1.77e-06
Smp_168080.2 SmLINC04606-IBu 0.91 2.49e-06 1.00e-04
Smp_168080.2 SmLINC04864-IBu 0.90 2.98e-06 1.00e-04
Smp_168080.2 SmLINC05307-IBu 0.94 6.43e-08 8.01e-06
Smp_168080.2 SmLINC05569-IBu 0.91 1.49e-06 7.07e-05
Smp_168080.2 SmLINC06111-IBu 0.90 2.58e-06 1.00e-04
Smp_168080.2 SmLINC06240-IBu 0.96 8.44e-09 2.04e-06
Smp_168080.2 SmLINC06405-IBu 0.91 2.07e-06 8.92e-05
Smp_168080.2 SmLINC06441-IBu 0.92 8.97e-07 4.94e-05
Smp_168080.2 SmLINC06535-IBu 0.90 3.29e-06 1.00e-04
Smp_168080.2 SmLINC06852-IBu 0.91 2.44e-06 1.00e-04
Smp_168080.2 SmLINC06982-IBu 0.92 1.00e-06 5.35e-05
Smp_000380.1 Smp_168080.2 0.91 2.10e-06 9.02e-05
Smp_004230.1 Smp_168080.2 0.92 6.48e-07 3.93e-05
Smp_008370.1 Smp_168080.2 0.92 1.10e-06 5.71e-05
Smp_009310.1 Smp_168080.2 0.91 1.61e-06 7.49e-05
Smp_018510.1 Smp_168080.2 0.94 9.77e-08 1.06e-05
Smp_021060.1 Smp_168080.2 0.90 4.05e-06 1.00e-04
Smp_032920.1 Smp_168080.2 0.91 1.40e-06 6.78e-05
Smp_032970.1 Smp_168080.2 0.95 5.17e-08 6.91e-06
Smp_034940.3 Smp_168080.2 0.91 1.37e-06 6.66e-05
Smp_036270.4 Smp_168080.2 0.93 3.90e-07 2.76e-05
Smp_038730.10 Smp_168080.2 0.90 2.64e-06 1.00e-04
Smp_042160.2 Smp_168080.2 0.91 2.13e-06 9.09e-05
Smp_168080.2 Smp_051230.3 0.95 3.62e-08 5.43e-06
Smp_168080.2 Smp_051230.4 0.95 2.33e-08 4.02e-06
Smp_051670.1 Smp_168080.2 0.91 1.61e-06 7.47e-05
Smp_056680.2 Smp_168080.2 0.91 1.74e-06 7.91e-05
Smp_056680.3 Smp_168080.2 0.91 1.74e-06 7.91e-05
Smp_168080.2 Smp_061580.1 0.92 8.05e-07 4.58e-05
Smp_067980.1 Smp_168080.2 0.93 3.06e-07 2.34e-05
Smp_072190.1 Smp_168080.2 -0.90 4.42e-06 1.00e-04
Smp_076040.3 Smp_168080.2 0.90 4.34e-06 1.00e-04
Smp_077690.1 Smp_168080.2 0.91 1.83e-06 8.18e-05
Smp_083180.1 Smp_168080.2 0.93 2.79e-07 2.19e-05
Smp_095460.1 Smp_168080.2 0.93 3.62e-07 2.62e-05
Smp_097750.1 Smp_168080.2 0.90 3.12e-06 1.00e-04
Smp_100790.1 Smp_168080.2 0.92 6.48e-07 3.93e-05
Smp_104000.1 Smp_168080.2 -0.91 2.43e-06 1.00e-04
Smp_110400.3 Smp_168080.2 0.93 2.68e-07 2.13e-05
Smp_114740.1 Smp_168080.2 0.92 6.48e-07 3.93e-05
Smp_119050.1 Smp_168080.2 0.93 5.05e-07 3.30e-05
Smp_168080.2 Smp_122020.1 0.91 1.32e-06 6.50e-05
Smp_124150.1 Smp_168080.2 0.97 1.27e-09 5.95e-07
Smp_168080.2 Smp_124830.1 0.91 1.92e-06 8.46e-05
Smp_128900.1 Smp_168080.2 0.92 7.33e-07 4.29e-05
Smp_139790.1 Smp_168080.2 0.95 2.30e-08 3.99e-06
Smp_145710.1 Smp_168080.2 0.90 3.31e-06 1.00e-04
Smp_150450.1 Smp_168080.2 0.96 7.11e-09 1.82e-06
Smp_157390.1 Smp_168080.2 -0.90 2.54e-06 1.00e-04
Smp_157450.1 Smp_168080.2 0.97 6.77e-10 3.96e-07
Smp_168080.2 Smp_159900.1 0.93 1.99e-07 1.74e-05
Smp_168080.2 Smp_160000.2 -0.92 6.74e-07 4.04e-05
Smp_168080.2 Smp_162070.1 0.91 2.35e-06 9.76e-05
Smp_162370.1 Smp_168080.2 0.95 4.02e-08 5.83e-06
Smp_167350.1 Smp_168080.2 0.91 1.30e-06 6.43e-05
Smp_168080.2 Smp_167680.2 0.91 1.63e-06 7.54e-05
Smp_174520.1 Smp_168080.2 0.91 1.89e-06 8.38e-05
Smp_168080.2 Smp_178400.1 0.92 5.40e-07 3.47e-05
Smp_178960.1 Smp_168080.2 0.91 1.94e-06 8.51e-05
Smp_168080.2 Smp_182770.1 0.94 1.87e-07 1.66e-05
Smp_185220.1 Smp_168080.2 0.94 1.88e-07 1.67e-05
Smp_185370.1 Smp_168080.2 0.92 6.78e-07 4.06e-05
Smp_168080.2 Smp_187590.1 0.90 2.86e-06 1.00e-04
Smp_188900.1 Smp_168080.2 0.95 1.59e-08 3.11e-06
Smp_191250.1 Smp_168080.2 0.94 1.47e-07 1.41e-05
Smp_168080.2 Smp_194830.1 0.95 1.85e-08 3.45e-06
Smp_195060.1 Smp_168080.2 0.96 2.36e-09 8.88e-07
Smp_168080.2 Smp_195070.1 0.99 1.39e-12 8.11e-09
Smp_197430.1 Smp_168080.2 0.91 2.45e-06 1.00e-04
Smp_199470.1 Smp_168080.2 0.95 5.26e-08 6.99e-06
Smp_199850.1 Smp_168080.2 0.93 2.64e-07 2.11e-05
Smp_202140.1 Smp_168080.2 0.90 3.52e-06 1.00e-04
Smp_203770.1 Smp_168080.2 0.90 3.62e-06 1.00e-04
Smp_168080.2 Smp_210240.1 -0.90 4.06e-06 1.00e-04
Smp_212290.1 Smp_168080.2 0.93 2.44e-07 2.00e-05