Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_167900.1 Data

Correlation between Smp_167900.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_167900.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_167900.1 0 2.31 3.06 5.33 6.34

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_167900.1 SmLINC00004-IBu 0.81 1.00e-04 2.20e-03
Smp_167900.1 SmLINC00282-IBu -0.84 7.36e-05 1.10e-03
Smp_167900.1 SmLINC00376-IBu 0.80 2.00e-04 2.80e-03
Smp_167900.1 SmLINC02255-IBu -0.94 1.33e-07 1.25e-05
Smp_167900.1 SmLINC02630-IBu -0.87 1.90e-05 4.00e-04
Smp_167900.1 SmLINC02657-IBu -0.94 6.46e-08 7.60e-06
Smp_167900.1 SmLINC03769-IBu -0.81 1.00e-04 2.20e-03
Smp_167900.1 SmLINC03930-IBu -0.82 1.00e-04 2.00e-03
Smp_167900.1 SmLINC04421-IBu 0.81 2.00e-04 2.60e-03
Smp_167900.1 SmLINC05284-IBu -0.88 1.31e-05 3.00e-04
Smp_167900.1 SmLINC05989-IBu -0.80 2.00e-04 2.90e-03
Smp_167900.1 SmLINC06128-IBu -0.82 1.00e-04 2.00e-03
Smp_167900.1 SmLINC06535-IBu -0.90 2.76e-06 1.00e-04

Correlation between Smp_167900.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_035090.2 0 -1.41 -2.69 -14.78 -14.86
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_157140.1 0 9.07 10.07 10.84 11.76
Smp_160230.1 0 -0.76 -3.24 -8.69 -10.72
Smp_167900.1 0 2.31 3.06 5.33 6.34

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_167900.1 Smp_035090.2 -0.90 3.31e-06 1.00e-04
Smp_167900.1 Smp_055340.2 0.90 4.21e-06 1.00e-04
Smp_167900.1 Smp_157140.1 0.93 2.68e-07 2.13e-05
Smp_167900.1 Smp_160230.1 -0.90 4.09e-06 1.00e-04