Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_167710.1 Data

Correlation between Smp_167710.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
Smp_167710.1 0 -1.15 -3.10 -9.21 -8.94

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_167710.1 SmLINC04271-IBu 0.64 9.10e-03 3.24e-02

Correlation between Smp_167710.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_167710.1 0 -1.15 -3.10 -9.21 -8.94

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_167710.1 SmLINC00282-IBu 0.81 1.00e-04 2.20e-03
Smp_167710.1 SmLINC00376-IBu -0.80 2.00e-04 3.00e-03
Smp_167710.1 SmLINC01431-IBu -0.80 3.00e-04 3.40e-03
Smp_167710.1 SmLINC01637-IBu 0.82 1.00e-04 1.70e-03
Smp_167710.1 SmLINC02255-IBu 0.95 5.67e-08 6.95e-06
Smp_167710.1 SmLINC02630-IBu 0.98 8.65e-12 2.28e-08
Smp_167710.1 SmLINC02657-IBu 0.87 2.29e-05 4.00e-04
Smp_167710.1 SmLINC03848-IBu 0.83 1.00e-04 1.50e-03
Smp_167710.1 SmLINC03930-IBu 0.83 1.00e-04 1.50e-03
Smp_167710.1 SmLINC04421-IBu -0.81 1.00e-04 2.10e-03
Smp_167710.1 SmLINC05284-IBu 0.92 1.11e-06 5.54e-05
Smp_167710.1 SmLINC05720-IBu 0.86 3.15e-05 6.00e-04
Smp_167710.1 SmLINC05989-IBu 0.86 3.58e-05 6.00e-04
Smp_167710.1 SmLINC06128-IBu 0.88 1.40e-05 3.00e-04
Smp_167710.1 SmLINC06535-IBu 0.88 1.31e-05 3.00e-04

Correlation between Smp_167710.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_097800.1 0 -1.17 -2.80 -12.04 -16.29
Smp_149670.1 0 -1.98 -3.69 -10.45 -9.35
Smp_160230.1 0 -0.76 -3.24 -8.69 -10.72
Smp_167710.1 0 -1.15 -3.10 -9.21 -8.94

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_055340.2 Smp_167710.1 -0.91 1.41e-06 6.80e-05
Smp_097800.1 Smp_167710.1 0.92 1.16e-06 5.95e-05
Smp_149670.1 Smp_167710.1 0.91 2.31e-06 9.63e-05
Smp_167710.1 Smp_160230.1 0.90 3.66e-06 1.00e-04