Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_167440.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC01433-IBu 0 5.33 4.84 12.27 11.18
SmLINC01822-IBu 0 0.00 0.00 7.51 5.59
SmLINC04054-IBu 0 0.17 -0.60 5.38 2.72
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04769-IBu 0 1.36 2.94 5.73 3.10
SmLINC05009-IBu 0 0.41 -0.30 3.78 1.52
SmLINC05171-IBu 0 -0.19 -0.55 5.90 3.90
SmLINC05632-IBu 0 4.56 6.06 7.28 6.53
SmLINC05870-IBu 0 0.25 4.65 5.77 4.71
SmLINC06007-IBu 0 -3.84 -0.77 4.39 2.11
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06536-IBu 0 -3.65 0.03 5.24 4.25
Smp_167440.1 0 0.66 3.65 5.64 4.36

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_167440.1 SmLINC00477-IBu 0.80 2.00e-04 3.10e-03
Smp_167440.1 SmLINC01066-IBu 0.84 6.36e-05 1.00e-03
Smp_167440.1 SmLINC01433-IBu 0.81 2.00e-04 2.70e-03
Smp_167440.1 SmLINC01822-IBu 0.82 1.00e-04 1.90e-03
Smp_167440.1 SmLINC04054-IBu 0.80 2.00e-04 3.00e-03
Smp_167440.1 SmLINC04475-IBu 0.85 4.24e-05 7.00e-04
Smp_167440.1 SmLINC04769-IBu 0.84 6.14e-05 9.00e-04
Smp_167440.1 SmLINC05009-IBu 0.84 6.74e-05 1.00e-03
Smp_167440.1 SmLINC05171-IBu 0.83 9.27e-05 1.30e-03
Smp_167440.1 SmLINC05632-IBu 0.83 9.38e-05 1.30e-03
Smp_167440.1 SmLINC05870-IBu 0.86 3.53e-05 6.00e-04
Smp_167440.1 SmLINC06007-IBu 0.85 4.11e-05 7.00e-04
Smp_167440.1 SmLINC06221-IBu 0.82 1.00e-04 1.80e-03
Smp_167440.1 SmLINC06536-IBu 0.83 8.92e-05 1.30e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_129110.1 0 7.10 10.62 11.56 10.18
Smp_167440.1 0 0.66 3.65 5.64 4.36

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_129110.1 Smp_167440.1 0.9 4.14e-06 1.00e-04