Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_167350.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_167350.1 0 -0.80 -1.92 -3.39 -6.34

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_167350.1 SmLINC02255-IBu 0.87 1.81e-05 4.00e-04
Smp_167350.1 SmLINC02630-IBu 0.87 2.00e-05 4.00e-04
Smp_167350.1 SmLINC02657-IBu 0.84 8.51e-05 1.20e-03
Smp_167350.1 SmLINC03930-IBu 0.82 1.00e-04 1.90e-03
Smp_167350.1 SmLINC06128-IBu 0.87 1.59e-05 3.00e-04
Smp_167350.1 SmLINC06535-IBu 0.85 5.24e-05 8.00e-04
Smp_167350.1 SmLINC06892-IBu 0.81 1.00e-04 2.20e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_032990.1 0 -1.53 -9.49 -13.75 -8.21
Smp_067980.1 0 -0.94 -11.67 -4.00 -4.18
Smp_077690.1 0 -0.88 -2.98 -12.11 -12.11
Smp_109240.1 0 -1.29 -3.52 -6.30 -10.11
Smp_140680.2 0 -1.06 -11.75 -8.40 -8.18
Smp_167350.1 0 -0.80 -1.92 -3.39 -6.34
Smp_168080.2 0 -1.01 -12.06 -12.06 -12.06
Smp_185350.1 0 -1.75 -2.87 -10.48 -10.48
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76
Smp_195070.1 0 -1.13 -9.73 -18.26 -16.31
Smp_201750.1 0 -0.56 -4.79 -7.34 -11.47
Smp_202140.1 0 -1.27 -3.64 -10.44 -10.44
Smp_206150.1 0 -1.95 -4.12 -11.47 -11.47

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_167350.1 Smp_032990.1 0.90 2.74e-06 1.00e-04
Smp_067980.1 Smp_167350.1 0.91 1.97e-06 8.63e-05
Smp_077690.1 Smp_167350.1 0.95 1.60e-08 3.12e-06
Smp_109240.1 Smp_167350.1 0.92 1.16e-06 5.95e-05
Smp_167350.1 Smp_140680.2 0.93 3.94e-07 2.78e-05
Smp_167350.1 Smp_168080.2 0.91 1.30e-06 6.43e-05
Smp_167350.1 Smp_185350.1 0.91 1.98e-06 8.63e-05
Smp_188900.1 Smp_167350.1 0.91 1.23e-06 6.19e-05
Smp_167350.1 Smp_195070.1 0.90 3.10e-06 1.00e-04
Smp_201750.1 Smp_167350.1 0.92 7.69e-07 4.43e-05
Smp_202140.1 Smp_167350.1 0.96 8.72e-09 2.08e-06
Smp_206150.1 Smp_167350.1 0.94 1.58e-07 1.48e-05