Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_166560.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00007-IBu 0 2.71 2.19 5.12 7.33
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02776-IBu 0 4.33 2.79 6.19 9.25
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04237-IBu 0 0.00 0.00 3.71 7.42
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC04896-IBu 0 -1.86 -3.75 1.58 4.07
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_166560.1 0 0.51 0.40 -0.15 4.81

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_166560.1 SmLINC00007-IBu 0.85 4.21e-05 7.00e-04
Smp_166560.1 SmLINC01520-IBu 0.90 3.51e-06 1.00e-04
Smp_166560.1 SmLINC02029-IBu 0.92 7.10e-07 4.03e-05
Smp_166560.1 SmLINC02539-IBu 0.85 5.71e-05 9.00e-04
Smp_166560.1 SmLINC02540-IBu 0.80 2.00e-04 3.00e-03
Smp_166560.1 SmLINC02577-IBu 0.87 1.52e-05 3.00e-04
Smp_166560.1 SmLINC02776-IBu 0.85 4.85e-05 8.00e-04
Smp_166560.1 SmLINC02783-IBu 0.89 6.35e-06 1.00e-04
Smp_166560.1 SmLINC02786-IBu 0.98 1.41e-11 3.10e-08
Smp_166560.1 SmLINC03658-IBu 0.89 7.77e-06 2.00e-04
Smp_166560.1 SmLINC04235-IBu 0.86 3.41e-05 6.00e-04
Smp_166560.1 SmLINC04237-IBu 0.86 2.58e-05 5.00e-04
Smp_166560.1 SmLINC04627-IBu 0.83 1.00e-04 1.40e-03
Smp_166560.1 SmLINC04896-IBu 0.91 1.68e-06 7.42e-05
Smp_166560.1 SmLINC05404-IBu 0.92 6.62e-07 3.83e-05
Smp_166560.1 SmLINC05684-IBu 0.92 5.46e-07 3.35e-05
Smp_166560.1 SmLINC06239-IBu 0.82 1.00e-04 1.80e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_089270.1 0 3.49 0.00 4.50 10.21
Smp_105450.1 0 4.55 9.19 10.26 14.94
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_126340.1 0 0.00 2.97 7.05 12.21
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_137460.1 0 4.80 0.00 4.12 10.48
Smp_138360.1 0 -0.10 -4.27 4.84 10.60
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_152150.1 0 0.00 0.00 8.69 15.96
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_166560.1 0 0.51 0.40 -0.15 4.81
Smp_167830.1 0 0.00 0.00 6.17 12.87
Smp_170840.1 0 3.57 0.00 5.93 11.86
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_194910.1 0 0.37 1.92 8.43 11.13

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_166560.1 Smp_037720.1 0.90 4.10e-06 1.00e-04
Smp_041540.1 Smp_166560.1 0.98 1.26e-11 3.18e-08
Smp_166560.1 Smp_070540.1 0.97 4.51e-10 3.06e-07
Smp_089270.1 Smp_166560.1 0.93 3.14e-07 2.38e-05
Smp_166560.1 Smp_105450.1 0.96 6.63e-09 1.74e-06
Smp_166560.1 Smp_105450.2 0.94 9.59e-08 1.05e-05
Smp_126340.1 Smp_166560.1 0.97 1.07e-09 5.33e-07
Smp_166560.1 Smp_136730.1 0.93 4.43e-07 3.02e-05
Smp_137460.1 Smp_166560.1 0.94 1.70e-07 1.56e-05
Smp_166560.1 Smp_138360.1 0.90 4.27e-06 1.00e-04
Smp_139160.1 Smp_166560.1 0.91 1.83e-06 8.18e-05
Smp_152150.1 Smp_166560.1 0.95 1.48e-08 2.97e-06
Smp_164400.1 Smp_166560.1 0.97 2.04e-09 8.07e-07
Smp_166560.1 Smp_167830.1 0.93 2.73e-07 2.16e-05
Smp_166560.1 Smp_170840.1 0.94 9.58e-08 1.05e-05
Smp_181070.1 Smp_166560.1 0.91 1.28e-06 6.36e-05
Smp_166560.1 Smp_194910.1 0.90 4.73e-06 1.00e-04