Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_166500.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00171-IBu 0 -0.59 -5.27 3.90 3.47
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00484-IBu 0 -0.02 2.64 6.82 5.24
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01171-IBu 0 4.66 1.75 6.39 6.26
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC01433-IBu 0 5.33 4.84 12.27 11.18
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04345-IBu 0 -0.21 -0.00 6.97 4.53
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06010-IBu 0 1.91 2.45 5.62 4.62
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06418-IBu 0 -2.45 2.43 6.45 5.75
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
SmLINC06536-IBu 0 -3.65 0.03 5.24 4.25
SmLINC06537-IBu 0 -3.92 -3.92 4.71 2.74
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_166500.2 0 -9.58 -3.24 2.58 2.78

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_166500.2 SmLINC00004-IBu 0.83 1.00e-04 1.40e-03
Smp_166500.2 SmLINC00171-IBu 0.80 2.00e-04 2.90e-03
Smp_166500.2 SmLINC00369-IBu 0.95 2.46e-08 3.93e-06
Smp_166500.2 SmLINC00376-IBu 0.80 2.00e-04 2.90e-03
Smp_166500.2 SmLINC00477-IBu 0.85 4.31e-05 7.00e-04
Smp_166500.2 SmLINC00484-IBu 0.86 3.36e-05 6.00e-04
Smp_166500.2 SmLINC00525-IBu 0.89 4.95e-06 1.00e-04
Smp_166500.2 SmLINC00548-IBu 0.91 1.34e-06 6.34e-05
Smp_166500.2 SmLINC00633-IBu 0.94 1.77e-07 1.52e-05
Smp_166500.2 SmLINC01066-IBu 0.81 2.00e-04 2.60e-03
Smp_166500.2 SmLINC01084-IBu 0.94 1.88e-07 1.59e-05
Smp_166500.2 SmLINC01122-IBu 0.97 3.89e-10 2.56e-07
Smp_166500.2 SmLINC01139-IBu 0.90 4.35e-06 1.00e-04
Smp_166500.2 SmLINC01171-IBu 0.84 8.33e-05 1.20e-03
Smp_166500.2 SmLINC01431-IBu 0.95 3.02e-08 4.52e-06
Smp_166500.2 SmLINC01432-IBu 0.85 4.56e-05 7.00e-04
Smp_166500.2 SmLINC01433-IBu 0.82 1.00e-04 2.00e-03
Smp_166500.2 SmLINC01435-IBu 0.91 1.74e-06 7.62e-05
Smp_166500.2 SmLINC01538-IBu 0.94 1.14e-07 1.12e-05
Smp_166500.2 SmLINC01569-IBu 0.97 7.18e-10 3.81e-07
Smp_166500.2 SmLINC01733-IBu 0.93 2.34e-07 1.85e-05
Smp_166500.2 SmLINC01746-IBu 0.91 2.07e-06 8.62e-05
Smp_166500.2 SmLINC02084-IBu 0.92 1.16e-06 5.72e-05
Smp_166500.2 SmLINC02394-IBu 0.81 2.00e-04 2.50e-03
Smp_166500.2 SmLINC02546-IBu 0.88 9.49e-06 2.00e-04
Smp_166500.2 SmLINC03309-IBu 0.92 7.12e-07 4.03e-05
Smp_166500.2 SmLINC03542-IBu 0.86 3.06e-05 5.00e-04
Smp_166500.2 SmLINC03693-IBu 0.90 3.85e-06 1.00e-04
Smp_166500.2 SmLINC03849-IBu -0.81 1.00e-04 2.30e-03
Smp_166500.2 SmLINC03927-IBu 0.88 1.00e-05 2.00e-04
Smp_166500.2 SmLINC04345-IBu 0.82 1.00e-04 1.80e-03
Smp_166500.2 SmLINC04421-IBu 0.90 4.20e-06 1.00e-04
Smp_166500.2 SmLINC04423-IBu 0.86 2.58e-05 5.00e-04
Smp_166500.2 SmLINC04432-IBu 0.85 4.73e-05 8.00e-04
Smp_166500.2 SmLINC04475-IBu 0.82 1.00e-04 2.00e-03
Smp_166500.2 SmLINC04478-IBu 0.96 2.47e-09 8.50e-07
Smp_166500.2 SmLINC04521-IBu 0.96 2.81e-09 9.22e-07
Smp_166500.2 SmLINC04663-IBu 0.89 8.28e-06 2.00e-04
Smp_166500.2 SmLINC04684-IBu 0.84 6.56e-05 1.00e-03
Smp_166500.2 SmLINC05147-IBu 0.92 1.00e-06 5.16e-05
Smp_166500.2 SmLINC05258-IBu 0.87 2.01e-05 4.00e-04
Smp_166500.2 SmLINC05274-IBu -0.82 1.00e-04 1.90e-03
Smp_166500.2 SmLINC05289-IBu 0.83 8.96e-05 1.30e-03
Smp_166500.2 SmLINC05604-IBu 0.83 1.00e-04 1.40e-03
Smp_166500.2 SmLINC06010-IBu 0.82 1.00e-04 1.80e-03
Smp_166500.2 SmLINC06024-IBu 0.92 1.16e-06 5.72e-05
Smp_166500.2 SmLINC06145-IBu 0.86 2.62e-05 5.00e-04
Smp_166500.2 SmLINC06221-IBu 0.88 1.28e-05 3.00e-04
Smp_166500.2 SmLINC06418-IBu 0.82 1.00e-04 1.80e-03
Smp_166500.2 SmLINC06444-IBu 0.90 4.28e-06 1.00e-04
Smp_166500.2 SmLINC06449-IBu 0.86 3.30e-05 6.00e-04
Smp_166500.2 SmLINC06490-IBu -0.84 6.93e-05 1.00e-03
Smp_166500.2 SmLINC06536-IBu 0.81 2.00e-04 2.30e-03
Smp_166500.2 SmLINC06537-IBu 0.81 1.00e-04 2.20e-03
Smp_166500.2 SmLINC06543-IBu 0.89 5.22e-06 1.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_031040.1 0 8.57 0.03 12.35 12.40
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_034980.2 0 8.75 0.00 11.30 11.03
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_051210.3 0 3.15 11.52 13.74 13.72
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_056360.3 0 -9.92 -10.13 2.08 1.89
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_090140.1 0 2.57 9.09 11.94 12.46
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_123550.1 0 2.43 2.16 11.52 11.47
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_159070.2 0 -0.62 -11.03 1.85 1.97
Smp_166500.2 0 -9.58 -3.24 2.58 2.78
Smp_166860.1 0 0.00 0.00 10.18 10.19
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_172960.1 0 3.27 6.54 14.72 15.13
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_203090.1 0 0.00 0.00 10.35 10.67
Smp_205270.1 0 0.71 -0.40 10.02 9.83
Smp_212510.1 0 -0.05 -0.36 -7.08 -10.79

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_031040.1 Smp_166500.2 0.96 3.79e-09 1.20e-06
Smp_033260.1 Smp_166500.2 0.94 1.12e-07 1.17e-05
Smp_034980.2 Smp_166500.2 0.91 1.61e-06 7.47e-05
Smp_038870.2 Smp_166500.2 0.95 2.59e-08 4.33e-06
Smp_166500.2 Smp_040970.2 0.97 1.55e-09 6.74e-07
Smp_050350.3 Smp_166500.2 0.91 1.72e-06 7.83e-05
Smp_051210.3 Smp_166500.2 0.92 8.23e-07 4.65e-05
Smp_166500.2 Smp_052280.2 0.90 4.51e-06 1.00e-04
Smp_056360.3 Smp_166500.2 0.91 2.23e-06 9.41e-05
Smp_056460.1 Smp_166500.2 0.94 1.48e-07 1.42e-05
Smp_058660.1 Smp_166500.2 0.92 5.75e-07 3.62e-05
Smp_166500.2 Smp_079420.1 0.96 3.16e-09 1.07e-06
Smp_090140.1 Smp_166500.2 0.90 2.52e-06 1.00e-04
Smp_094050.1 Smp_166500.2 0.92 6.81e-07 4.07e-05
Smp_166500.2 Smp_123550.1 0.93 4.90e-07 3.24e-05
Smp_166500.2 Smp_137000.2 0.94 6.22e-08 7.83e-06
Smp_137320.1 Smp_166500.2 0.90 3.55e-06 1.00e-04
Smp_141680.1 Smp_166500.2 0.91 1.53e-06 7.22e-05
Smp_166500.2 Smp_145400.1 0.95 5.45e-08 7.16e-06
Smp_150980.2 Smp_166500.2 0.94 1.64e-07 1.52e-05
Smp_151120.1 Smp_166500.2 0.94 6.23e-08 7.84e-06
Smp_166500.2 Smp_156930.1 0.91 1.31e-06 6.48e-05
Smp_159070.2 Smp_166500.2 0.93 1.98e-07 1.73e-05
Smp_166860.1 Smp_166500.2 0.91 1.57e-06 7.35e-05
Smp_172480.1 Smp_166500.2 0.96 3.20e-09 1.08e-06
Smp_166500.2 Smp_172960.1 0.96 5.59e-09 1.55e-06
Smp_194860.1 Smp_166500.2 0.96 3.59e-09 1.16e-06
Smp_203090.1 Smp_166500.2 0.98 1.50e-10 1.51e-07
Smp_166500.2 Smp_205270.1 0.96 9.46e-09 2.20e-06
Smp_212510.1 Smp_166500.2 -0.90 3.47e-06 1.00e-04