Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_166350.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00007-IBu 0 2.71 2.19 5.12 7.33
SmLINC00266-IBu 0 2.25 3.99 6.14 6.95
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02545-IBu 0 3.54 1.98 7.53 8.45
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02776-IBu 0 4.33 2.79 6.19 9.25
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04237-IBu 0 0.00 0.00 3.71 7.42
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
Smp_166350.1 0 0.00 0.00 5.84 7.37

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_166350.1 SmLINC00001-IBu 0.91 1.83e-06 7.90e-05
Smp_166350.1 SmLINC00004-IBu 0.92 6.65e-07 3.84e-05
Smp_166350.1 SmLINC00007-IBu 0.94 7.40e-08 8.34e-06
Smp_166350.1 SmLINC00266-IBu 0.84 7.12e-05 1.10e-03
Smp_166350.1 SmLINC00369-IBu 0.80 2.00e-04 2.90e-03
Smp_166350.1 SmLINC00525-IBu 0.88 1.32e-05 3.00e-04
Smp_166350.1 SmLINC01084-IBu 0.89 7.85e-06 2.00e-04
Smp_166350.1 SmLINC01431-IBu 0.84 6.15e-05 9.00e-04
Smp_166350.1 SmLINC01520-IBu 0.91 2.39e-06 9.53e-05
Smp_166350.1 SmLINC02029-IBu 0.93 2.54e-07 1.95e-05
Smp_166350.1 SmLINC02084-IBu 0.85 5.44e-05 9.00e-04
Smp_166350.1 SmLINC02394-IBu 0.92 1.08e-06 5.42e-05
Smp_166350.1 SmLINC02539-IBu 0.96 7.31e-09 1.73e-06
Smp_166350.1 SmLINC02540-IBu 0.91 2.13e-06 8.78e-05
Smp_166350.1 SmLINC02545-IBu 0.84 6.58e-05 1.00e-03
Smp_166350.1 SmLINC02577-IBu 0.91 1.24e-06 5.98e-05
Smp_166350.1 SmLINC02776-IBu 0.85 4.05e-05 7.00e-04
Smp_166350.1 SmLINC02783-IBu 0.85 4.14e-05 7.00e-04
Smp_166350.1 SmLINC02786-IBu 0.84 7.78e-05 1.10e-03
Smp_166350.1 SmLINC03326-IBu 0.85 5.33e-05 8.00e-04
Smp_166350.1 SmLINC03927-IBu 0.88 9.91e-06 2.00e-04
Smp_166350.1 SmLINC04235-IBu 0.84 8.61e-05 1.20e-03
Smp_166350.1 SmLINC04237-IBu 0.81 2.00e-04 2.30e-03
Smp_166350.1 SmLINC04421-IBu 0.89 7.76e-06 2.00e-04
Smp_166350.1 SmLINC04423-IBu 0.81 2.00e-04 2.50e-03
Smp_166350.1 SmLINC04627-IBu 0.82 1.00e-04 1.90e-03
Smp_166350.1 SmLINC05289-IBu 0.94 1.38e-07 1.28e-05
Smp_166350.1 SmLINC05404-IBu 0.80 3.00e-04 3.30e-03
Smp_166350.1 SmLINC05604-IBu 0.91 1.68e-06 7.44e-05
Smp_166350.1 SmLINC05684-IBu 0.89 8.44e-06 2.00e-04
Smp_166350.1 SmLINC06024-IBu 0.87 2.04e-05 4.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_007950.1 0 5.54 7.26 12.66 14.89
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_083430.1 0 4.18 6.49 11.73 13.40
Smp_086450.3 0 0.00 0.00 9.98 12.32
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_123880.1 0 1.71 4.05 9.88 12.08
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_163700.1 0 -1.15 0.72 8.02 10.29
Smp_166350.1 0 0.00 0.00 5.84 7.37
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_194380.1 0 2.98 2.11 7.89 10.14
Smp_196830.1 0 -0.76 0.59 8.97 10.89
Smp_202610.1 0 0.45 2.30 9.93 11.71

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_166350.1 Smp_007950.1 0.91 1.33e-06 6.52e-05
Smp_166350.1 Smp_037720.1 0.93 2.52e-07 2.04e-05
Smp_166350.1 Smp_050350.3 0.90 4.46e-06 1.00e-04
Smp_166350.1 Smp_056460.1 0.92 7.86e-07 4.50e-05
Smp_083430.1 Smp_166350.1 0.93 4.59e-07 3.09e-05
Smp_166350.1 Smp_086450.3 0.92 7.31e-07 4.28e-05
Smp_166350.1 Smp_095410.1 0.91 1.92e-06 8.46e-05
Smp_166350.1 Smp_102780.1 0.90 4.06e-06 1.00e-04
Smp_166350.1 Smp_123880.1 0.91 1.71e-06 7.82e-05
Smp_166350.1 Smp_131410.1 0.91 1.84e-06 8.20e-05
Smp_166350.1 Smp_137810.1 0.91 1.67e-06 7.67e-05
Smp_166350.1 Smp_139240.1 0.90 3.95e-06 1.00e-04
Smp_166350.1 Smp_140720.1 0.93 4.51e-07 3.05e-05
Smp_166350.1 Smp_155570.1 0.90 2.62e-06 1.00e-04
Smp_166350.1 Smp_163700.1 0.91 1.27e-06 6.33e-05
Smp_166350.1 Smp_187140.1 0.90 4.09e-06 1.00e-04
Smp_166350.1 Smp_192780.1 0.91 2.27e-06 9.51e-05
Smp_166350.1 Smp_194380.1 0.91 1.35e-06 6.60e-05
Smp_166350.1 Smp_196830.1 0.94 9.40e-08 1.03e-05
Smp_166350.1 Smp_202610.1 0.91 2.07e-06 8.93e-05